Deconvolution GUI Modularity

[nbollis]

Refactored the deconvolution parameters handling in the MetaMorpheus GUI to use custom controls and view models for better modularity and extensibility.

• SearchTaskWindow.xaml and .xaml.cs: Replaced stack panels and checkboxes with HostDeconParamControl and bound to DeconHostViewModel.
• GPTMDTaskWindow.xaml and SearchTaskWindow.xaml: Replaced GroupBox for "Deisotoping" with HostDeconParamControl bound to DeconHostViewModel.
• Added DeconvolutionTypeToControlConverter for converting DeconParamsViewModel to appropriate controls.
• Introduced new user controls ClassicDeconParamsControl and HostDeconParamControl.
• Added new view models ClassicDeconParamsViewModel, DeconHostViewModel, and IsoDecDeconParamsViewModel.
• Updated MetaMorpheus.sln.DotSettings to include "Decon" and "Deconvolute" in the user dictionary.

To Consider: Do we want to expose the product deconvolution parameters? Do we want to add decon parameter setting to calibration?

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 97.82609% with 4 lines in your changes missing coverage. Please review.

Project coverage is 93.73%. Comparing base (97d1761) to head (9a3b9db).

Files with missing lines	Patch %	Lines
...ons/ViewModels/Deconvolution/DeconHostViewModel.cs	97.05%	1 Missing and 1 partial :warning:
...s/ViewModels/Deconvolution/DeconParamsViewModel.cs	97.75%	1 Missing and 1 partial :warning:

Additional details and impacted files

[](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2429?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) ```diff @@ Coverage Diff @@ ## master #2429 +/- ## ========================================== + Coverage 93.69% 93.73% +0.03% ========================================== Files 141 145 +4 Lines 21883 22067 +184 Branches 3001 3043 +42 ========================================== + Hits 20504 20684 +180 - Misses 927 929 +2 - Partials 452 454 +2 ``` | [Files with missing lines](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2429?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc) | Coverage Δ | | |---|---|---| | [MetaMorpheus/GuiFunctions/MzLibExtensions.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2429?src=pr&el=tree&filepath=MetaMorpheus%2FGuiFunctions%2FMzLibExtensions.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9NekxpYkV4dGVuc2lvbnMuY3M=) | `100.00% <100.00%> (ø)` | | | [...odels/Deconvolution/ClassicDeconParamsViewModel.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2429?src=pr&el=tree&filepath=MetaMorpheus%2FGuiFunctions%2FViewModels%2FDeconvolution%2FClassicDeconParamsViewModel.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9WaWV3TW9kZWxzL0RlY29udm9sdXRpb24vQ2xhc3NpY0RlY29uUGFyYW1zVmlld01vZGVsLmNz) | `100.00% <100.00%> (ø)` | | | [...ons/ViewModels/Deconvolution/DeconHostViewModel.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2429?src=pr&el=tree&filepath=MetaMorpheus%2FGuiFunctions%2FViewModels%2FDeconvolution%2FDeconHostViewModel.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9WaWV3TW9kZWxzL0RlY29udm9sdXRpb24vRGVjb25Ib3N0Vmlld01vZGVsLmNz) | `97.05% <97.05%> (ø)` | | | [...s/ViewModels/Deconvolution/DeconParamsViewModel.cs](https://app.codecov.io/gh/smith-chem-wisc/MetaMorpheus/pull/2429?src=pr&el=tree&filepath=MetaMorpheus%2FGuiFunctions%2FViewModels%2FDeconvolution%2FDeconParamsViewModel.cs&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=smith-chem-wisc#diff-TWV0YU1vcnBoZXVzL0d1aUZ1bmN0aW9ucy9WaWV3TW9kZWxzL0RlY29udm9sdXRpb24vRGVjb25QYXJhbXNWaWV3TW9kZWwuY3M=) | `97.75% <97.75%> (ø)` | |

[Alexander-Sol]

"Minimum intensity ratio" and "Nominal window width" won't accept non-integer inputs.

[Alexander-Sol]

Also, can't set assumed charge states to negative when no data is loaded in.

[nbollis]

Also, can't set assumed charge states to negative when no data is loaded in.

It is set to positive mode. No negatives can be input. Once RNA is added, then the toggle between positive and negative will be exposed.