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smithlabcode / ribotricer

A tool for accurately detecting actively translating ORFs from Ribo-seq data
http://doi.org/djv4
GNU General Public License v3.0
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ORF Annotations #145

Open bshim181 opened 9 months ago

bshim181 commented 9 months ago

Hello,

I was wondering if there is a way to further break down ORF annotations presented by the ribotricer algorithm.

Screenshot 2023-09-08 at 4 05 50 PM

I would like to get a sense for proportion of different non-canonical ORF types such as extended, truncated, polycistronic, or internal ORFs.

saketkc commented 9 months ago

While it is currently not supported internally, if you pass it a custom index file following the format of the index file with these annotations, it is doable.