The strain tracking pipeline gave me a table with site id's and allele counts as follows. Is there a way to get to identified strains with name and possible abundance?
site_id allele count_samples count_A count_T count_C count_G
63572 G 3 0 2 0 1
127401 C 3 2 0 1 0
144689 G 3 0 3 0 1
238073 T 3 0 1 0 3
266469 T 3 0 1 3 0
266786 T 3 0 1 3 0
The strain tracking pipeline gave me a table with site id's and allele counts as follows. Is there a way to get to identified strains with name and possible abundance?
site_id allele count_samples count_A count_T count_C count_G 63572 G 3 0 2 0 1 127401 C 3 2 0 1 0 144689 G 3 0 3 0 1 238073 T 3 0 1 0 3 266469 T 3 0 1 3 0 266786 T 3 0 1 3 0