I used mmseqs to build my own custom hhblits database, and use hhblits to search homologous sequences in custom database. However, the first name of the ID is missing in a3m format of the output, while in hhr format not.
hhr output:
a3m output:
The above "-" is added in the original fasta file, because I want to check if the first letter is indeed missing.
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Expected Behavior
No name error in a3m file.
I used mmseqs to build my own custom hhblits database, and use hhblits to search homologous sequences in custom database. However, the first name of the ID is missing in a3m format of the output, while in hhr format not.
hhr output:
a3m output:
The above "-" is added in the original fasta file, because I want to check if the first letter is indeed missing.
Steps to Reproduce (for bugs)
hhblits -i ID.fas -o try5.hhr -oa3m try5.a3m -n 1 -d ./TcluMsa
HH-suite Output (for bugs)
Normal
Context
Providing context helps us come up with a solution and improve our documentation for the future.
Your Environment
HH-suite3