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sokrypton / ColabFold

Making Protein folding accessible to all!
MIT License
1.99k stars 499 forks source link

Add alphafold 3 #662

Open wswxyq opened 1 week ago

wswxyq commented 1 week ago

Hello, Thanks for your work on moving alphafold to Colab. Since AlphaFold3 is open sourced now, do you plan to add it to colabfold? Thanks!

1peng2333 commented 4 days ago

I created this notebook to interact with AlphaFold 3 in Colab-like environment. It emulates the I/O of ColabFold with similar outputs. There are some challenges involving with the implementation of mmseqs using AlphaFold 3 database (Huge memory cost) and the term of use of AlphaFold 3 parameters (You have to request it from Google). Thus, it is achieved by running a Colab container in docker on a local or remote machine and host it to Google Colab.

alphafold3_colab_jupyter