INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
The cBioPortal has recently revamped its API and the original API for which a client was implemented in indra.databases.cbio_client was taken down. The new APi is completely different in terms of its endpoints, much of the nomenclature, and the data structures it returns, requiring effectively a new implementation of most functions. However, the PR aims to preserve the behavior of each client function for compatibility with various integrations.
The cBioPortal has recently revamped its API and the original API for which a client was implemented in
indra.databases.cbio_clientwas taken down. The new APi is completely different in terms of its endpoints, much of the nomenclature, and the data structures it returns, requiring effectively a new implementation of most functions. However, the PR aims to preserve the behavior of each client function for compatibility with various integrations.