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sotnir / NENAH-BIDS

A collaborate platform for streamlining a BIDS workflow for the NENAH study, on the linux workstation based at University of Southampton.
https://www.southampton.ac.uk/cndng
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Working for NENAHC033 #113

Closed yukaizou2015 closed 8 months ago

yukaizou2015 commented 2 years ago

Naming of the fMRI rescans aren't following BIDS format:

[yz23e20@uos-15263 NENAH_BIDS]$ ls rawdata/sub-NENAHC033/func/ -l
total 315788
-rw-rw-r-- 1 yz23e20 neuropediatrics     2349 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-1_bold1.json
-rw-rw-r-- 1 yz23e20 neuropediatrics 40929796 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-1_bold1.nii.gz
-rw-rw-r-- 1 yz23e20 neuropediatrics     2346 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-1_bold2.json
-rw-rw-r-- 1 yz23e20 neuropediatrics 65692081 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-1_bold2.nii.gz
-rw-rw-r-- 1 yz23e20 neuropediatrics     2349 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-2_bold1.json
-rw-rw-r-- 1 yz23e20 neuropediatrics 78180558 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-2_bold1.nii.gz
-rw-rw-r-- 1 yz23e20 neuropediatrics     2348 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-2_bold2.json
-rw-rw-r-- 1 yz23e20 neuropediatrics 67316157 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-2_bold2.nii.gz
-r--rw-r-- 1 yz23e20 neuropediatrics     2147 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-3_bold.json
-r--rw-r-- 1 yz23e20 neuropediatrics 71212233 Feb 24 22:14 sub-NENAHC033_task-rest_dir-AP_run-3_bold.nii.gz
-rw-rw-r-- 1 yz23e20 neuropediatrics      116 Feb 24 22:15 sub-NENAHC033_task-rest_dir-AP_run-3_events.tsv

run-1_bold1 was run-1 of the first visit run-1_bold2 was run-1 of the second visit run-2_bold1 was run-2 of the first visit run-2_bold2 was run-2 of the second visit run-3 is the only one that is correct

May need to look into the way Issue #27 was fixed