fellow travellers: exciting sketching & kmer developments

sourmash-bio / sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

http://sourmash.readthedocs.io/en/latest/

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fellow travellers: exciting sketching & kmer developments #2739

Open ctb opened 1 year ago

ctb commented 1 year ago

https://github.com/bluenote-1577/sylph - Jim Shaw and Yun William Yu. "sylph's novelty lies in using a statistical adjustment to correct for low coverage genomes within the sample"

ctb commented 1 year ago

Fast and robust metagenomic sequence comparison through sparse chaining with skani https://www.nature.com/articles/s41592-023-02018-3