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spaenigs / peptidereactor

A tool for an in-depth comparison and benchmarking of peptide encodings.
MIT License
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Use structure slices for secondary structure based encodings. #15

Closed spaenigs closed 4 years ago

spaenigs commented 4 years ago

Concerns asa, ta, ssec, sseb, disorder, disorderb, disorderc.

spaenigs commented 4 years ago
origin (columns) replacement (columns)
asa spinex (ASA) dssp (ACC)
ta spinex (phi1, psi1 dssp (PHI, PSI)
ssec* spinex (SS) dssp (STRUCTURE)
sseb spinex (SS) dssp (STRUCTURE)
disorder vsl2 (PREDICTION) -
disorderb vsl2 (DISORDER) dssp (STRUCTURE: -*)
disorderc vsl2 (DISORDER) dssp (STRUCTURE: -)
*: SpineX DSSP
H H,G,I
C S,T,C,-
E E,B

see https://en.wikipedia.org/wiki/Protein_secondary_structure#/media/File:SegmentLengths.dist.png