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sr320 / ceabigr

Workshop on genomic data integration with a emphasis on epigenetic data (FHL 2022)
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Offspring data #111

Open sr320 opened 2 months ago

sr320 commented 2 months ago

Are we ready? Yep! Where is the data and related metadata?

kubu4 commented 2 months ago

Is this referring to the larval samples?

If yes, here's info.

Metadata (needs to be ported to CEABIGR):

https://github.com/epigeneticstoocean/2018OAExp_larvae

https://github.com/epigeneticstoocean/2018_L18_OAExp_Cvirginica_DNAm/blob/main/data/L18_larvae_meta.csv

Raw reads:

https://owl.fish.washington.edu/nightingales/C_virginica/2018OALarvae_DNAm_discovery/

Trimmed reads:

https://gannet.fish.washington.edu/Atumefaciens/20220826-cvir-larvae_zygote-BSseq-fastp_trimming/

MultiQC report:

https://gannet.fish.washington.edu/Atumefaciens/20220826-cvir-larvae_zygote-BSseq-fastp_trimming/multiqc_report.html

Trimming notebook:

https://robertslab.github.io/sams-notebook/posts/2022/2022-08-29-FastQ-Trimming-and-QC---C.virginica-Larval-BS-seq-Data-from-Lotterhos-Lab-and-Part-of-CEABIGR-Project-Using-fastp-on-Mox/index.html