issues
search
ssandrews
/
Smoldyn
Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions
GNU General Public License v3.0
24
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
fix simularium file generation
#140
AlexPatrie
opened
2 months ago
0
fix: update python configuration
#139
AlexPatrie
closed
9 months ago
0
fix: bump biosimulators-simularium version in python setup
#138
AlexPatrie
closed
9 months ago
0
feat: Integrate simularium file generation in exec combine function
#137
AlexPatrie
closed
9 months ago
0
feat: Release wheel for python 3.12
#136
dilawar
opened
1 year ago
0
Build fails with clang-16 due to the use of deprecated features
#135
yurivict
closed
1 year ago
1
Strange behavior with serial numbers of 0th order reaction
#134
formersbach
closed
1 year ago
4
build(deps): bump scipy from 1.8.0 to 1.10.0 in /source/pybind11/tests
#133
dependabot[bot]
closed
1 year ago
0
Diagnostics output to file
#132
formersbach
closed
1 year ago
4
Time step between saved images is inconsistent
#131
formersbach
closed
1 year ago
5
maintenance: python3.11 support and disables a few falling biosimulator tests
#130
dilawar
closed
1 year ago
0
Python binding isn't installed
#129
yurivict
opened
2 years ago
2
build(deps): bump numpy from 1.21.5 to 1.22.0 in /source/pybind11/tests
#128
dependabot[bot]
closed
2 years ago
0
All tests fail: [permission denied]
#127
yurivict
opened
2 years ago
4
Fixes to CI pipeline and support for python 3.11
#126
dilawar
closed
2 years ago
0
Revert "build(deps): bump numpy from 1.19.0 to 1.22.0 in /source/pybind11/tests"
#125
dilawar
closed
2 years ago
0
build(deps): bump numpy from 1.19.0 to 1.22.0 in /source/pybind11/tests
#124
dependabot[bot]
closed
2 years ago
0
fix (test): doctest returns 0 on failure
#123
dilawar
closed
2 years ago
0
fix: issue 121
#122
dilawar
closed
2 years ago
0
test_api.py failed
#121
sagitter
opened
2 years ago
7
build(deps): bump numpy from 1.19.0 to 1.21.0 in /source/pybind11/tests
#120
dependabot[bot]
closed
2 years ago
1
fix: Fix issue 118
#119
dilawar
closed
2 years ago
1
bound error on Win/OSX but not on linux
#118
dilawar
closed
2 years ago
0
fix (ci): GLUT linking issue on OSX
#117
dilawar
closed
2 years ago
0
fix: `setAction` was not accepting `trans` action
#116
dilawar
closed
2 years ago
0
Maze solver
#115
dilawar
opened
2 years ago
0
fix: Issue 113
#114
dilawar
closed
3 years ago
1
1 BioSimulators test case is failing at a segmentation fault in Linux/Python3.9
#113
jonrkarr
closed
3 years ago
3
The cmake option to enable tests is confusingly called OPTION_EXAMPLES
#112
yurivict
opened
3 years ago
2
tarballs don't contain test code
#111
yurivict
closed
3 years ago
4
fix (cicd): Fixes to GH actions
#110
dilawar
closed
3 years ago
3
chore: fixed some compiler warnings
#109
dilawar
closed
3 years ago
0
chore: fixes to some compiler warnings
#108
dilawar
closed
3 years ago
0
doc: running smoldyn in headless environments
#107
dilawar
closed
3 years ago
3
doc: Closes issue 101
#106
dilawar
closed
3 years ago
0
Fix: Issue 83
#105
dilawar
closed
3 years ago
0
Enabled Python 3.10 wheels
#104
dilawar
closed
3 years ago
0
feat: completed BioSimulators API
#103
jonrkarr
closed
3 years ago
0
Can parameter values be changed after simulations are read from files?
#102
jonrkarr
closed
3 years ago
2
Add documentation for running Smoldyn in headless environments
#101
jonrkarr
opened
3 years ago
0
Update for biosimulators utils 0.1.124
#100
jonrkarr
closed
3 years ago
0
feat: updated to Biosimulators-utils 0.1.114: organized options, adde…
#99
jonrkarr
closed
3 years ago
0
Aligned `biosimulators` module with other BioSimulators APIs
#98
jonrkarr
closed
3 years ago
0
Fixing use of Xvfb in BioSimulators Docker image to better support multiple simultaneous executions
#97
jonrkarr
closed
3 years ago
0
chore: updating to BioSimulators-utils 0.1.96
#96
jonrkarr
closed
3 years ago
0
updating to biosimulators-utils 0.1.95
#95
jonrkarr
closed
3 years ago
1
supporting changes of dimensions with SED-ML
#94
jonrkarr
closed
3 years ago
0
incorporating new error messages into COMBINE module
#93
jonrkarr
closed
3 years ago
0
remove sphinx-tikz extension.
#92
dilawar
closed
3 years ago
0
Update xvfb-startup.sh
#91
bilalshaikh42
closed
3 years ago
4
Next