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genhub
Explore eukaryotic genome composition and organization with iLoci
BSD 3-Clause "New" or "Revised" License
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Latest RefSeq recipe for Hymenoptera references
#95
standage
closed
5 years ago
0
Add support for obsolete RefSeq reference genomes
#94
standage
closed
5 years ago
3
using yaml.safe_load as per https://github.com/yaml/pyyaml/wiki/PyYAM…
#93
vpbrendel
closed
5 years ago
1
Updated name to reflect new name on NCBI
#92
timlai4
closed
5 years ago
2
Update broken config for Aedes aegypti
#91
standage
closed
6 years ago
0
Restoring support for HymenopteraBase reference genomes
#90
standage
closed
7 years ago
2
Update configs for reference genomes
#89
standage
closed
7 years ago
1
Update configs
#88
standage
closed
7 years ago
1
Add support for GenBank sequences, add Znev as a reference genome
#87
standage
closed
7 years ago
1
Banana genome
#86
standage
closed
8 years ago
1
New script for maintaining a cache of RefSeq genomes
#85
standage
closed
8 years ago
0
Download exception handling
#84
standage
closed
8 years ago
1
Data validation updates
#83
standage
closed
8 years ago
1
New protein->iLocus mapping file
#82
standage
closed
8 years ago
1
Easily identify piLocus representatives
#81
standage
closed
8 years ago
1
Create spec file for GFF3 input, integrate into workflow
#80
standage
opened
8 years ago
0
Painless transition from nose to py.test. Closes #73.
#79
standage
closed
8 years ago
0
New Amel annotation
#78
standage
closed
8 years ago
1
Updates to documentation and ancillary files
#77
standage
closed
8 years ago
2
Checksums missing for G. raimondii config
#76
standage
closed
8 years ago
1
New Amel genome
#75
standage
closed
8 years ago
0
Option for overriding integrity (shasum) check
#74
standage
closed
8 years ago
1
nose --> py.test
#73
standage
closed
8 years ago
0
Add documentation for creating new .yml config files
#72
standage
closed
8 years ago
0
.txt --> .tsv for some ancillary data files
#71
standage
closed
8 years ago
2
LocusPocus Fidibus!
#70
standage
closed
8 years ago
0
Deprecate `*.simple-iloci.txt` file
#69
standage
opened
8 years ago
1
Another mosquito genome
#68
standage
closed
8 years ago
1
piLocus type for pre-mRNA, mRNA, exon, and intron TSV files
#67
standage
opened
8 years ago
0
Support for generic input
#66
standage
closed
8 years ago
1
Spider mite genome
#65
standage
closed
8 years ago
1
Shuffled data and non memory limits for `cluster` task
#64
standage
closed
8 years ago
0
Script for calculating phi/sigma measures of genome compactness
#63
standage
closed
8 years ago
2
New recipes
#62
standage
closed
8 years ago
1
RefSeq annotations for Pdom, Pcan, Dqua
#61
standage
closed
8 years ago
1
Configuration registry is cumbersome
#60
standage
closed
8 years ago
0
Docs cleanup
#59
standage
closed
8 years ago
0
New recipe for Daphnia
#58
standage
closed
8 years ago
1
Script to compute iLocus summary
#57
standage
closed
8 years ago
0
Correct iLocus type reporting
#56
standage
closed
8 years ago
0
New `--cdargs` option.
#55
standage
closed
8 years ago
1
New rice recipe
#54
standage
closed
8 years ago
1
Add new `seqfilter` mechanism
#53
standage
closed
8 years ago
1
NT_ and NW_ accessions in mammalian genomes correspond to patches, variants
#52
standage
closed
8 years ago
0
Allow user to override cd-hit defaults
#51
standage
closed
8 years ago
0
Closes #48.
#50
standage
closed
8 years ago
1
New rice recipe?
#49
standage
closed
8 years ago
0
Add `delta` option to genhub-build script
#48
standage
closed
8 years ago
0
Overlapping exons prematurely kill C. reinhardtii build
#47
standage
opened
8 years ago
0
iLocus label formatting, table cleanup
#46
standage
closed
8 years ago
0
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