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statgen
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bamUtil
http://genome.sph.umich.edu/wiki/BamUtil
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Do not use makefiles from libStatGen
#73
alexreg
opened
5 days ago
0
Erroneous CIGAR string after clipOverlap
#72
MboiTui
opened
3 months ago
1
splitChromosome without header?
#71
jtmorgan0
opened
5 months ago
0
License?
#70
jjv5
opened
6 months ago
1
Odd stats reported for clipOverlap
#69
joegeorgeson
opened
1 year ago
0
stop using deprecated git protocol
#68
ahvigil
closed
2 years ago
0
build is broken due to deprecated git protocol
#67
ahvigil
closed
2 years ago
1
bamutil diff - Get record for every read being compared
#66
DavidStreid
opened
2 years ago
2
can not install with conda
#65
Frank1219
opened
2 years ago
2
bash -x testBam2FastQ.sh and bash -x testMergeBam.sh failed on centos8_aarch64
#64
Tom-python0121
opened
2 years ago
0
bam2FastQ generates empty fastq files
#63
LanyingMa
opened
3 years ago
0
BamUtil: recab error: failed to open reference genome
#62
cbostwick87
closed
3 years ago
6
Error building from source: libStatGen
#61
moldach
opened
3 years ago
3
the clang compiler does not support -pg option on versions of OS X 10.9 and later
#60
TommySchooner
closed
4 years ago
4
`bam diff` seems to return the reads that look identical between A and B
#59
hisplan
opened
4 years ago
1
Makefile should not ignore system LDFLAGS
#58
bichkd
opened
4 years ago
0
cannot consume -.ubam on a pipe
#57
bwlang
opened
4 years ago
2
Cannot Compile NonPrimaryDedup Branch
#56
BrenKenna
opened
4 years ago
5
Dedup does not work from std/in
#55
slazicoicr
opened
5 years ago
2
`bam diff` should exit with a return code
#54
hisplan
opened
5 years ago
0
Cut middle of reads
#53
shimbalama
opened
5 years ago
2
Building bamUtil returns error: undefined reference
#52
Dlfn
opened
5 years ago
4
clipoverlap on raw output straight from bwa
#51
bjkelly
closed
6 years ago
3
Compile error
#50
LiyanJi-code
closed
6 years ago
4
Building bamUtil returns error: call of overloaded 'to_string(int&)' is ambiguous
#49
sam0per
closed
6 years ago
4
clipOverlap in outward facing pairs
#48
dariober
opened
6 years ago
1
bam diff when 2 reads have indentical names AND start positions?
#47
anderspitman
opened
6 years ago
1
How to cite bamUtil
#46
heewookl
closed
6 years ago
1
Compilation doesn't work (warnings=errors)
#45
Tsallagov
opened
6 years ago
5
Option to output bamUtil stats to STDOUT rather than to a file
#44
dylkot
closed
7 years ago
2
1.0.13 labeled as the "latest release" under releases
#43
heewookl
closed
7 years ago
1
Assumption made in code masked by earlier check.
#42
innovate-invent
opened
7 years ago
6
fix first file gzip trailling garbage issue
#41
Griffan
closed
7 years ago
0
External memory sort manager
#40
Griffan
closed
8 years ago
0
External memory sort manager
#39
Griffan
closed
8 years ago
0
resolve issue of read gourp info of interleaved output
#38
Griffan
closed
8 years ago
0
resolve issue of read gourp info of interleved output
#37
Griffan
closed
8 years ago
0
resolve issue of read gourp info of interleved output
#36
Griffan
closed
8 years ago
0
fix double reading globalHeader in pipe
#35
Griffan
closed
8 years ago
0
resolve problem of globalHeader caused by pipe
#34
Griffan
closed
8 years ago
0
add global header in sortByNameOnTheFly
#33
Griffan
closed
8 years ago
0
add branch to expect perfect paired dataset
#32
Griffan
closed
8 years ago
0
advoid potential memory leak
#31
Griffan
closed
8 years ago
0
open access to record limit
#30
Griffan
closed
8 years ago
0
External memory sort manager
#29
Griffan
closed
8 years ago
0
bam2FastQ: fixing output file name whith --gzip
#28
fgvieira
closed
8 years ago
1
rename parameters and add pthread
#27
Griffan
closed
8 years ago
0
fix makefile
#26
Griffan
closed
8 years ago
0
Add explicit usage commands
#25
jonathonl
closed
8 years ago
2
Add usage and help command to print dialoge and exit.
#24
rleonid
closed
8 years ago
4
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