statgen gotcloud issues

statgen / gotcloud

Genomes on the Cloud, Mapping & Variant Calling Pipelines

http://genome.sph.umich.edu/wiki/GotCloud

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issues

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Got error when Downloading gotcloud on AWS

#33 rmn8 opened 6 months ago
0
Tried initializing software with cd src/; make; cd .. but got unanticipated error

#32 carversh opened 3 years ago
1
vcfCooker; gotocloud install error, ubuntu 20.04

#31 zillurbmb51 opened 3 years ago
1
Fail encountered because of the verison of libStatGen in src/ is too old

#30 yaohuayang-uva opened 4 years ago
2
`gotcloud test` fails on Ubuntu 16.10

#29 pjvandehaar opened 7 years ago
1
`cd src && make test` is failing on Ubuntu 16.10

#28 pjvandehaar closed 7 years ago
2
Specify dependencies more fully

#27 pjvandehaar opened 7 years ago
1
unify SAMTOOLS_SORT_EXE vs SAMTOOLS_EXE and BAMUTIL vs BAM_EXE

#26 pjvandehaar closed 8 years ago
4
Add integration to um-csg Slack #notifications channel for Travis CI builds

#25 Frencil opened 8 years ago
0
Update BWA to v0.7.13

#24 schelcj closed 8 years ago
3
Add class ExternalMemorySortManager and MateVectorByRN

#23 Griffan closed 7 years ago
0
Add ExternalMemorySortManager and MateVectorByRN

#22 Griffan closed 8 years ago
6
Create `gotcloud archive ...` to record what was done

#21 pjvandehaar opened 8 years ago
0
Update documentation on the wiki

#20 pjvandehaar opened 8 years ago
0
Track job resource usage on Flux

#19 pjvandehaar closed 8 years ago
4
Use a better `system` function

#18 pjvandehaar opened 8 years ago
1
Test on slurm and flux/torque

#17 pjvandehaar opened 8 years ago
0
Use gcGetOptions to autogen documentation

#16 pjvandehaar opened 8 years ago
0
Avoid the large scheduler overhead for short jobs

#15 pjvandehaar opened 8 years ago
1
Align test fails using gotcloud.1.17.5

#14 mkolovic closed 8 years ago
3
Print errors/warnings to STDERR/STDOUT

#13 schelcj closed 1 year ago
7
handles duplicate variants in merge

#12 atks closed 8 years ago
0
gotcloud - remove unneeded loops

#11 pjvandehaar closed 9 years ago
0
Readme: txt -> md

#10 pjvandehaar closed 9 years ago
0
A GC-content graph is bounded (0,120)

#9 pjvandehaar closed 8 years ago
2
`$val` is not initialized in one branch

#8 pjvandehaar closed 9 years ago
3
Fix a bug for the SGE batch mode of snpcall.

#7 v-a-s-a closed 9 years ago
0
Compatibility patches

#6 coordinatesystem closed 9 years ago
1
Update libVcfVcfFile.cpp

#5 Griffan closed 9 years ago
0
Line 1155 writetouch to non-existent file

#4 kmurphy902 closed 10 years ago
3
by default don't install deps that have already been met on the local sy...

#3 schelcj closed 10 years ago
0
bug fixes

#2 schelcj closed 10 years ago
0
new snpcall monitoring utility.

#1 schelcj closed 10 years ago
0