search

statgen / ruth

Robust Unified Hardy-Weinberg Equilibrium Test
Apache License 2.0
6 stars 2 forks source link

GT=. causes segmentation fault with RUTH #6

Open jjfarrell opened 2 years ago

jjfarrell commented 2 years ago

When our VCF, has a GT=. instead of GT=./., a segmentation fault is triggered by ruth.

[E::bgzf_read_block] Failed to read BGZF block data at offset 1038687 expected 11606 bytes; hread returned 9871 [W::bgzf_read_block] EOF marker is absent. The input may be truncated