Citrus sinensis genome

[patricksis]

Publication and Data Information

https://www.nature.com/articles/ng.2472

Additional Information

@mestato This organism was on the list in issue #464. No organism was ever created, but the reference genome was, located here: https://hardwoodgenomics.org/bio_data/1962952. Maybe we can complete this organism, I found the relevant files here: http://citrus.hzau.edu.cn/orange/download/index.php

Checklist

See New Genome Documentation for detailed instructions.

• [ ] Create Organism
• [ ] Create Publication
• [ ] Create Reference Genome
• [ ] Create InterProScan Annotation
• [ ] Create BLAST Annotation
• [ ] Run Chado FASTA Loader for CDS
• [ ] Run Chado FASTA Loader for Polypeptides
• [ ] Publish Tripal content
• [ ] Create KEGG Annotation
• [ ] Run Chado KEGG Loader
• [ ] Run Chado BLAST XML results loader
• [ ] Run Chado InterProScan XML results loader
• [ ] Create Blast Database

[bradfordcondon]

hi all, special note on this one- citrus sinensis is the Tripal "test" organism that one would load in the Tripal tutorial. Take care if theres pre-existing data, that it isn't from that.

[almasaeed2010]

Hello!

There is no data except for a genome reference which contains info about the publication but I am not sure if we wanted to host this organism to begin with.