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steineggerlab / Metabuli

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
GNU General Public License v3.0
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metabuli-inspect? #18

Closed sjaenick closed 1 year ago

sjaenick commented 1 year ago

Hi again @JaebeomKim0731,

would it be possible (similar to kraken2-inspect) to provide a way to list the taxa contained in a Metabuli database?

I'm currently playing around with assembled and binned metagenomic contigs and different ways to taxonomically assign them; in cases where I obtain different classifications from different approaches, it would be great to be able to check if a certain taxon is included in a Metabuli database.

What do you think?

Sebastian

jaebeom-kim commented 1 year ago

Hi Sebastian, That is a great idea. I agree with you. I will provide it, soon.

jaebeom-kim commented 1 year ago

I added database-report workflow for it. Please see #21.