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steineggerlab
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ufcg
UFCG: Universal Fungal Core Genes
https://ufcg.steineggerlab.com
GNU General Public License v3.0
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NUC only uses ITS
#29
JWDebler
opened
4 days ago
4
Metadata file checking fails when .tsv is symbolic link
#28
jackscanlan
opened
1 week ago
2
issue with AGUSTUS
#27
Keevai09
closed
1 month ago
4
ERROR! Tree file of gene CMD1 not found : trees2/aligned_COX2_pro.zZ.fasta.treefile
#26
Burythelightwithin
closed
4 months ago
1
Can you add a new gene in the list and run the whole analysis from profile to tree?
#25
kusandeep
opened
4 months ago
1
Bump org.json:json from 20230227 to 20231013
#24
dependabot[bot]
closed
8 months ago
0
Unable to install ufcg by conda
#23
jun-yeong-heo
closed
9 months ago
2
Error! metadata file improperly formatted
#22
Ellouzlab
opened
10 months ago
2
ERROR! Tree file of gene COX2 not found : trees2/aligned_COX2_pro.zZ.fasta.treefile
#21
salvatierra8
opened
11 months ago
9
ERROR! java.io.IOException: Failed to list contents of /tmp/netdata-updater-hAcEdu4h9c
#20
Truongphi20
opened
11 months ago
1
[Done] Add sensitivity option for `profile` module
#19
endixk
closed
10 months ago
4
Bugs on deleting temporary files
#18
Changwanseo
closed
1 year ago
1
ufcg train: .hmm files empty, markers missing from assemblies
#17
alisqq
closed
1 year ago
4
How to resolve warning "Failed to detect environment path" and error "AUGUSTUS-PPX config file is absent or improperly formatted."
#16
Changwanseo
closed
10 months ago
2
Could not initialize class envs.config.GenericConfig
#15
jungleblack007
opened
1 year ago
5
ITS genes not being found
#14
rissidaniel
opened
1 year ago
7
Nucleotide alignment with invalid nucleotide "X"
#13
Changwanseo
closed
1 year ago
1
Checkpoint feature or `tree` and `align` modules does not work properly
#12
endixk
closed
1 year ago
0
Bump json from 20220924 to 20230227
#11
dependabot[bot]
closed
1 year ago
0
how to change busco databases?
#10
jungleblack007
opened
1 year ago
4
absence of `mmseqs` binary not being properly resolved by the interactive `profile` module
#9
endixk
closed
1 year ago
0
Java OutOfBoundsException on some genomes
#8
BrigidaGallone
opened
1 year ago
1
ERROR! No internet connection
#7
yye88
opened
1 year ago
5
[Question] Train module issue
#6
llk578496
opened
1 year ago
1
Augustus takes 420G ram +59h
#5
Sebastien-Raguideau
opened
1 year ago
2
single- vs. multi-copy genes in align module
#4
BrigidaGallone
closed
1 year ago
4
v1.0.2 augustus issue
#3
Sebastien-Raguideau
opened
1 year ago
6
ERROR! java.io.IOException: Unable to delete file: .nfs
#2
Sebastien-Raguideau
opened
1 year ago
4
Applying ufcg to metagenomes
#1
Sebastien-Raguideau
closed
1 year ago
2