qvalue returns this error when the p-value distribution is truncated, i.e., not spanning the entire range of [0,1]. The authors of the qvalue package offers an alternative function qvalue_truncp to estimate qvalue in this situation.
I opened this issue to remind myself to write an errorHandling function for truncated p-value distribution.
I got this error:
Error in smooth.spline(lambda, pi0, df = smooth.df)This issue has been discussed on the
qvaluepackage GitHub site in multiple threads: https://github.com/StoreyLab/qvalue/issues/9 https://github.com/StoreyLab/qvalue/issues/13qvaluereturns this error when the p-value distribution is truncated, i.e., not spanning the entire range of [0,1]. The authors of theqvaluepackage offers an alternative functionqvalue_truncpto estimateqvaluein this situation.I opened this issue to remind myself to write an errorHandling function for truncated p-value distribution.