stevekm / reportIT

IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results
GNU General Public License v3.0
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Need to integrate tumor & tissue type #9

Open stevekm opened 7 years ago

stevekm commented 7 years ago

Find information on tumor and tissue types per sample and integrate them into the report, use a criteria to match with correct IPMKB clinical interpretations

stevekm commented 7 years ago

Data source has been found, integration will be developed as data becomes available. Will likely require an extra sample sheet present for each analysis run with data per sample. Consider expanding functionality of pipeline to automatically detect presence of sample sheet and adjust actions accordingly; leave default reporting pipeline functionality intact in absence of sample sheet.