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stjude-biohackathon / KIDS23-Team3

SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.
https://www.stjude.org/patient-referrals/seek-treatment/taking-part-in-clinical-research/sickle-cell-clinical-research-intervention-program-sccrip.html
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Vocabulary from ATHENA for Synthea data converted into OMOP CDM #4

Closed RaghaSrinivasan closed 1 year ago

RaghaSrinivasan commented 1 year ago

https://ohdsi.org/software-tools/

ATHENA allows you to both search and load standardized vocabularies. It is a resource to be used, not a software tool to install. To download a zip file with all Standardized Vocabularies tables select all the vocabularies you need for your OMOP CDM. Vocabularies with standard concepts and very common usage are preselected. Add vocabularies that are used in your source data. Vocabularies that are proprietary have no select button. Click on the “License required” button to incorporate such a vocabulary into your list. The Vocabulary Team will contact you and request you demonstrate your license or help you connect to the right folks to obtain one.

ATHENA LINKS Vocabularies: Click Here Source Code: GitHub “10-Minute Tutorial” Video: Click Here

lindsayevanslee commented 1 year ago

Task marked done in the Project, so closing this issue