issues
search
stjude
/
CICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
https://stjude.github.io/CICERO
Other
35
stars
19
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Cannot rebuild docker image
#123
rannick
closed
9 months ago
2
fix: No unfiltered files shouldn't always fail
#122
adthrasher
closed
10 months ago
0
-g vs -r
#121
sh-5
closed
11 months ago
2
Failure to run docker for rnapeg.
#120
jdjdj0202
closed
11 months ago
2
Failure to run CICERO
#119
maximus3219
closed
11 months ago
1
fix: sambamba is not installed
#118
adthrasher
closed
1 year ago
0
fix: correct BAM header
#117
adthrasher
closed
1 year ago
0
docs: add Liqing details
#116
adthrasher
closed
1 year ago
0
Performance issues
#115
YussAb
closed
11 months ago
1
Call TE-chimeric from RNA seq
#113
HelloYanming
opened
1 year ago
0
Bug fix
#112
adthrasher
closed
1 year ago
0
Fix find for issue #109. Bump Docker base image to 20.04
#111
adthrasher
closed
1 year ago
0
Failed to build docker image
#110
JAYRJPT
closed
1 year ago
4
/opt/cicero/src/bin/Cicero.sh: line 318: /usr/bin/find: Argument list too long
#109
dade7
closed
1 year ago
2
Can cicero be used on other organisms?
#108
rLannes
closed
1 year ago
2
Add libssl dependency for BioPerl. Pin Test::Deep to resolve Perl dep…
#107
adthrasher
closed
1 year ago
0
Parameterize max checks for gfServer availability.
#106
adthrasher
closed
1 year ago
0
gfServer: Error in TCP non-blocking connect() 111 - Connection refused
#105
juanesarango
closed
1 year ago
2
Cicero cap fix
#104
cgallops
closed
2 years ago
0
Update DX app to Ubuntu 20.04
#103
adthrasher
closed
2 years ago
0
Update cgc metadata tags
#102
adthrasher
closed
2 years ago
0
Fix sorting of blat results
#101
liqingti
closed
2 years ago
0
Update CGC action to point to cgc-go repo in stjudecloud
#100
adthrasher
closed
2 years ago
0
UBTF::ATXN7L3
#99
dade7
opened
2 years ago
1
Update Docker invocation for CICERO
#98
adthrasher
closed
2 years ago
0
Update RNApeg image invocation
#97
adthrasher
closed
2 years ago
0
ERROR: unrecognized parameter RNApeg.sh
#96
dade7
closed
2 years ago
1
Final Fusion List Missing
#95
alfonso-lam
closed
1 year ago
3
added absolute path to final_qa steps for Slurm cluster
#94
drkennetz
closed
2 years ago
0
gfServer fails to start/is aborted.
#93
jcdaneshmand
closed
2 years ago
2
Running in batch error and CICERO keeps processing files using only 1 thread
#92
GACGAMA
closed
2 years ago
1
Docker Error: Can't locate English.pm in @INC
#91
ztamura
closed
2 years ago
1
java error could not find or load main class org.stjude.compbio.rnapeg.SplicedReadReporter
#90
AbbieSUN1990
closed
2 years ago
1
Gr ch37 trunk
#89
B2Pi
closed
2 years ago
2
refgene2protein: add transcript_variant_numeric field.
#88
mnedmonson
closed
2 years ago
0
Error with reference: BAM header not fully compatible with specified reference sequence
#87
GACGAMA
closed
2 years ago
1
refgene2protein updates
#86
mnedmonson
closed
3 years ago
0
Error when installing CICERO via docker on ArchLinux
#83
GACGAMA
closed
3 years ago
1
Update cgc
#82
adthrasher
closed
3 years ago
0
Add license to CWL
#81
adthrasher
closed
3 years ago
0
Add jq comamnd to update Docker version in CWL
#80
adthrasher
closed
3 years ago
0
ERRO[4901] error waiting for container: unexpected EOF
#79
JAYRJPT
closed
2 years ago
1
Point CGC CWL to CGC docker repo
#78
adthrasher
closed
3 years ago
0
Add tool description for CGC
#77
adthrasher
closed
3 years ago
0
Can we get read names for fusion-supporting supporting reads in the output?
#76
rsiddaway
opened
3 years ago
0
Update CGC CWL to use CGC docker repo
#75
adthrasher
closed
3 years ago
2
Fix combine step with many sc files
#74
mjz1
closed
3 years ago
0
Combine error with many putative fusions
#73
mjz1
closed
3 years ago
0
Update test data
#72
adthrasher
closed
3 years ago
0
Normalize bai
#71
adthrasher
closed
3 years ago
0
Next