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stjude / CICERO

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
https://stjude.github.io/CICERO
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Liqing CICERO updates #28

Closed liqingti closed 4 years ago

liqingti commented 4 years ago

Hi Andrew, please add the other parameters' explanation. Thanks.

adthrasher commented 4 years ago

@mnedmonson - Would you mind looking over the RNApeg documentation we have provided here?

adthrasher commented 4 years ago

@liqingti - Can you take a look at the following line? It hardcodes a soft clip requirement of 5, even though we have a configurable minimum soft clip count that is used elsewhere. Should this get updated? https://github.com/stjude/CICERO/blob/18876eb840d5f4a73738a5c6b5a52f895489fba2/src/scripts/prepareCiceroInput.pl#L129