Can we get read names for fusion-supporting supporting reads in the output?

stjude / CICERO

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

https://stjude.github.io/CICERO

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Can we get read names for fusion-supporting supporting reads in the output? #76

Open rsiddaway opened 3 years ago

rsiddaway commented 3 years ago

Is there a way to find the read names for reads that are supporting a particular fusion call?

For a particular fusion I cannot find the reads supporting it in IGV (usually this is not a problem) using the same bam file that was input for CICERO, and would like to try and see what's going on.

Thanks for the great work on this tool!