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stjude
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CICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
https://stjude.github.io/CICERO
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Final fusion result of local run is different from the standard result released
#70
kefei-Huang
closed
3 years ago
1
Add error codes and documentation on the meanings
#69
adthrasher
closed
3 years ago
1
Update qc_cicero_gInfo.sh
#68
B2Pi
closed
3 years ago
0
Convert CGC CWL to JSON
#67
adthrasher
closed
3 years ago
0
update gene name matching rule and fusion exclude list filtering rule
#66
adthrasher
closed
3 years ago
0
Enable automatic deploy to DNAnexus on GitHub release
#65
adthrasher
closed
3 years ago
1
CGC Automation
#62
jordan-rash
closed
3 years ago
0
Refactor dockerfile. Add automated Docker builds to CGC.
#61
adthrasher
closed
3 years ago
0
Rename lists of excluded items
#60
adthrasher
closed
3 years ago
0
Interpretation of output spanning reads and discordant reads
#59
ashleyzhou972
closed
3 years ago
1
Rename output file
#58
adthrasher
closed
3 years ago
2
frameness?
#57
ahdee
closed
3 years ago
1
Support .bai by normalizing index name
#56
adthrasher
closed
3 years ago
0
Running files in batch
#55
JAYRJPT
closed
2 years ago
1
ERROR: no local reference sequence found for BAM reference name chr1_KI270762v1_alt
#54
JAYRJPT
closed
3 years ago
5
Add flag to control out file name
#53
jordan-rash
closed
3 years ago
0
CWL + GHA (releases)
#52
jordan-rash
closed
3 years ago
0
Update to more descriptive error
#51
adthrasher
closed
3 years ago
1
Fix optimize dx
#48
adthrasher
closed
3 years ago
0
Releasing v1.4.0 on DNAnexus
#47
adthrasher
closed
3 years ago
0
Various fixes to the cicero and cicero_itd setup scripts
#46
atrull314
closed
3 years ago
0
Updating the setup scripts used on prem to be more inline with the Cicero.sh script
#45
atrull314
closed
3 years ago
0
singularity error
#43
alhafidzhamdan
closed
3 years ago
2
refgene2protein updates
#42
mnedmonson
closed
4 years ago
0
ExtractSClips.error- fail to determine the sequence name.
#41
JAYRJPT
closed
4 years ago
2
Documentation Creation
#40
jordan-rash
closed
4 years ago
5
Failed to build docker image
#39
JAYRJPT
closed
4 years ago
4
Potential typo
#38
jordan-rash
closed
4 years ago
1
Exclude list option
#37
adthrasher
closed
4 years ago
0
Removed redundant coverage file size check from qc_cicero_sclips.sh
#36
B2Pi
closed
4 years ago
2
Importing DX app files from SVN
#35
adthrasher
closed
4 years ago
0
Singularity RNApeg
#34
mehc555
closed
4 years ago
4
build the Docker image using the Dockerfile problem
#33
hanxuelian
closed
4 years ago
7
Update annotate.pl
#32
liqingti
closed
4 years ago
0
Update Transcript.pm
#31
liqingti
closed
4 years ago
0
Update rank_SVs.pl
#30
liqingti
closed
4 years ago
0
Update CiceroExtTools.pm
#29
liqingti
closed
4 years ago
0
Liqing CICERO updates
#28
liqingti
closed
4 years ago
2
STAR and Picard parameters
#27
kvaldez
closed
4 years ago
4
CRLF2 missed fusions
#26
adthrasher
opened
4 years ago
3
Add more details
#25
adthrasher
closed
4 years ago
0
hg38 support
#24
adthrasher
closed
4 years ago
0
remove " [-rg refflat]" in RNApeg command
#23
liqingti
closed
4 years ago
3
RNApeg input for " -r refflat " and "-rg refflat" is not cleared
#22
JAYRJPT
closed
4 years ago
3
hg38 reference
#21
alhafidzhamdan
closed
4 years ago
3
Documentation
#20
adthrasher
closed
4 years ago
0
gf server error in BLAT
#19
JAYRJPT
closed
4 years ago
33
svn link
#18
adthrasher
closed
4 years ago
0
Cicero time improvements
#17
adthrasher
closed
4 years ago
0
Read improvements
#16
adthrasher
closed
4 years ago
0
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