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stschiff
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msmc
Implementation of the multiple sequential markovian coalescent
GNU General Public License v3.0
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Update guide.md
#57
Creeki
closed
1 year ago
1
using the phased-vcf files as input for MSMC2
#56
Niloofar-Alaei
closed
1 year ago
1
AssertionError while using generate_multihetsep.py
#54
Luker121
closed
1 year ago
1
Unexpected 'g' when converting from type char[] to type ulong
#53
hyperoplus
closed
1 year ago
7
Error in installing software
#51
suying77
closed
2 years ago
0
MSMC2- install error
#50
lwlive
closed
2 years ago
2
"The sequence "chr1" was not found"
#48
selasphoruskershaw
closed
2 years ago
1
precompiled binaries not working on macOS Catalina
#47
jssdenton
closed
4 years ago
1
powell exceeding maximum iterations
#46
dieunelderilus
closed
1 year ago
6
How to install MSMC
#45
WANGyujian123
closed
5 years ago
1
trying to replicate Fig2 of Schiffels & Durbin (2014)
#44
andrewkern
closed
5 years ago
6
Abnormal results of MSMC, and need help ~
#43
Yun-HongWu
closed
5 years ago
2
Effect of introgression and selfing for estimation of population split
#42
oushujun
closed
5 years ago
1
decode time units
#41
arundurvasula
closed
5 years ago
3
MSMC error
#40
kentsing
closed
4 years ago
12
MSMC running with the divergent individuals
#39
yongzhiyang2012
closed
5 years ago
1
install error
#38
Sh1ne111
closed
6 years ago
1
running msmc without final result
#37
rxw125
closed
5 years ago
1
error running msmc
#36
JPingAMMS
closed
5 years ago
2
another Segmentation Fault
#35
mike2vandy
closed
5 years ago
1
AssertError bootstrap
#34
bioinformaticspcj
closed
6 years ago
2
Segfault on your test file in the guide
#33
fishextinction
closed
6 years ago
4
msmc error
#32
yuntwang
closed
6 years ago
2
Segmentation Falt on OSX (Mac)
#31
swamidass
closed
6 years ago
3
How to interpret the abormal results using two haplotypes from each population when running MSMC?
#30
biozzq
closed
6 years ago
1
different results between MSMC and MSMC2
#29
JiangYuLab
closed
6 years ago
2
Segmentation fault for running barley sample
#28
lilei1
closed
5 years ago
6
Can I use only sequence data in fasta format to run MSMC?
#27
YangChaoCN
closed
6 years ago
1
remove repeatmask region
#26
wlz0726
closed
7 years ago
2
Deal unphased vcf
#25
SC-Duan
closed
6 years ago
4
Can MSMC deal unphased haplotypes?
#24
SC-Duan
closed
8 years ago
0
resequencing data of non-model diploid organism
#23
xier92
closed
6 years ago
2
Couple issues understanding decode output
#22
jthuff
closed
6 years ago
5
Synthetic Haplotypes
#21
LiverpoolHarry
closed
6 years ago
1
question on analysis with whole genome data
#20
zhyanlin
closed
8 years ago
0
Questions of using MSMC decode on multiple haplotypes
#19
muhuaw
closed
6 years ago
4
should I keep unphased sites?
#18
hhu1
closed
8 years ago
1
Gene flow estimation with 2 haplotypes?
#17
arundurvasula
closed
9 years ago
4
Segmentation fault
#16
sailgu
closed
6 years ago
5
Segmentation fault with large number of scaffolds
#15
frl1
closed
9 years ago
4
Problems compiling on RHEL 6.4
#14
rvmoye
closed
9 years ago
1
Doesn't multithread
#13
alanrogers
closed
9 years ago
1
Won't compile on 32-bit linux.
#12
alanrogers
closed
6 years ago
3
memory consumption of MSMC
#11
hhu1
closed
9 years ago
2
mappability mask file
#10
BegonaMartinez
closed
9 years ago
1
MSMC with genomes in multiple scaffolds, not in chromosomes
#9
BegonaMartinez
closed
6 years ago
4
New Error installing from source
#8
potw
closed
9 years ago
5
msmc is too restrictive WRT chromosome IDs
#7
mhinsch
closed
9 years ago
1
msmc can't handle empty .conf files
#6
mhinsch
closed
6 years ago
1
error in tools/generate_multihetsep.py
#5
cxue
closed
9 years ago
1
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