SaharBJ
commented
1 month ago
sessionInfo()
R version 4.3.0 (2023-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblas-r0.3.3.so; LAPACK version 3.8.0
locale:
[1] LC_CTYPE=en_ZA.utf-8 LC_NUMERIC=C
[3] LC_TIME=en_ZA.utf-8 LC_COLLATE=en_ZA.utf-8
[5] LC_MONETARY=en_ZA.utf-8 LC_MESSAGES=en_ZA.utf-8
[7] LC_PAPER=en_ZA.utf-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_ZA.utf-8 LC_IDENTIFICATION=C
time zone: Africa/Johannesburg
tzcode source: system (glibc)
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] AnnotationHub_3.8.0 BiocFileCache_2.8.0 dbplyr_2.5.0
[4] patchwork_1.2.0 ggplot2_3.5.1 GenomicRanges_1.52.1
[7] GenomeInfoDb_1.36.4 IRanges_2.34.1 S4Vectors_0.38.2
[10] BiocGenerics_0.46.0 Seurat_5.1.0 SeuratObject_5.0.2
[13] sp_2.1-4 Signac_1.14.0
loaded via a namespace (and not attached):
[1] RColorBrewer_1.1-3 jsonlite_1.8.8
[3] magrittr_2.0.3 spatstat.utils_3.1-0
[5] zlibbioc_1.46.0 vctrs_0.6.5
[7] ROCR_1.0-11 memoise_2.0.1
[9] spatstat.explore_3.3-2 Rsamtools_2.16.0
[11] RCurl_1.98-1.16 RcppRoll_0.3.1
[13] htmltools_0.5.8.1 curl_5.2.2
[15] sctransform_0.4.1 parallelly_1.38.0
[17] KernSmooth_2.23-20 htmlwidgets_1.6.4
[19] ica_1.0-3 plyr_1.8.9
[21] cachem_1.1.0 plotly_4.10.4
[23] zoo_1.8-12 igraph_2.0.3
[25] mime_0.12 lifecycle_1.0.4
[27] pkgconfig_2.0.3 Matrix_1.6-5
[29] R6_2.5.1 fastmap_1.2.0
[31] GenomeInfoDbData_1.2.10 fitdistrplus_1.2-1
[33] future_1.34.0 shiny_1.9.1
[35] digest_0.6.37 colorspace_2.1-1
[37] AnnotationDbi_1.62.2 tensor_1.5
[39] RSpectra_0.16-2 irlba_2.3.5.1
[41] RSQLite_2.3.7 filelock_1.0.3
[43] progressr_0.14.0 fansi_1.0.6
[45] spatstat.sparse_3.1-0 httr_1.4.7
[47] polyclip_1.10-7 abind_1.4-5
[49] compiler_4.3.0 bit64_4.0.5
[51] withr_3.0.1 BiocParallel_1.34.2
[53] DBI_1.2.3 fastDummies_1.7.4
[55] MASS_7.3-58.4 rappdirs_0.3.3
[57] tools_4.3.0 lmtest_0.9-40
[59] interactiveDisplayBase_1.38.0 httpuv_1.6.15
[61] future.apply_1.11.2 goftest_1.2-3
[63] glue_1.7.0 nlme_3.1-162
[65] promises_1.3.0 grid_4.3.0
[67] Rtsne_0.17 cluster_2.1.4
[69] reshape2_1.4.4 generics_0.1.3
[71] hdf5r_1.3.11 gtable_0.3.5
[73] spatstat.data_3.1-2 tidyr_1.3.1
[75] data.table_1.16.0 utf8_1.2.4
[77] XVector_0.40.0 spatstat.geom_3.3-2
[79] RcppAnnoy_0.0.22 BiocVersion_3.17.1
[81] ggrepel_0.9.6 RANN_2.6.2
[83] pillar_1.9.0 stringr_1.5.1
[85] spam_2.10-0 RcppHNSW_0.6.0
[87] later_1.3.2 splines_4.3.0
[89] dplyr_1.1.4 lattice_0.21-8
[91] bit_4.0.5 survival_3.5-5
[93] deldir_2.0-4 tidyselect_1.2.1
[95] Biostrings_2.68.1 miniUI_0.1.1.1
[97] pbapply_1.7-2 gridExtra_2.3
[99] scattermore_1.2 Biobase_2.60.0
[101] matrixStats_1.4.1 stringi_1.8.4
[103] yaml_2.3.10 lazyeval_0.2.2
[105] codetools_0.2-19 tibble_3.2.1
[107] BiocManager_1.30.25 cli_3.6.3
[109] uwot_0.2.2 xtable_1.8-4
[111] reticulate_1.39.0 munsell_0.5.1
[113] Rcpp_1.0.13 globals_0.16.3
[115] spatstat.random_3.3-1 png_0.1-8
[117] spatstat.univar_3.0-1 parallel_4.3.0
[119] blob_1.2.4 dotCall64_1.1-1
[121] bitops_1.0-8 listenv_0.9.1
[123] viridisLite_0.4.2 scales_1.3.0
[125] ggridges_0.5.6 leiden_0.4.3.1
[127] purrr_1.0.2 crayon_1.5.3
[129] rlang_1.1.4 KEGGREST_1.40.1
[131] cowplot_1.1.3 fastmatch_1.1-4
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