Installation/running problem

[GoogleCodeExporter]

What steps will reproduce the problem?
1. Installation problem or running interproscan.sh

What is the expected output? What do you see instead?
I want to run InterProScan stand-alone in my computer

What version of the product are you using? On what operating system?
InterProScan 5 v44.0

Please provide any additional information below.

I have done the following steps to install and use the program: 

# Installation and unpacking InterProScan 5 v44.0

mkdir my_interproscan
cd my_interproscan
wget 
ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5-44.0/interproscan-5-44.0-64-bi
t.tar.gz
tar -pxvzf interproscan-5-44.0-64-bit.tar.gz

# Run GO terms search
./interproscan.sh –i iputfile.fasta –f tsv –t n –dp –goterms –o 
outputfile

I have just done the steps that I show you. When I run the last script I have 
obtained "permisson denied to interproscan.sh". So I have used:

chmod +x interproscan.sh

But when I run again I obtain the following text:

./interproscan.sh -i test_proteins.fasta -f tsv 

08/10/2013 16:40:15:830 Welcome to InterProScan-5-44.0
./interproscan.sh: line 38:  6814 Killed                  "$JAVA" 
-XX:+UseParallelGC -XX:ParallelGCThreads=2 -XX:+AggressiveOpts 
-XX:+UseFastAccessorMethods -Xms128M -Xmx2048M -jar interproscan-5.jar $@ -u 
$USER_DIR

I am not a expert in command-line, but I would like to run a InterProScan 
search to obtain GO terms for a large fasta file (RNA-seq data). Thank you in 
advance.

Original issue reported on code.google.com by lostomat...@gmail.com on 8 Oct 2013 at 2:50

[GoogleCodeExporter]

Hi,

It looks like you have permission problems on your machine. You normally don't 
need to change the permissions for interproscan.sh. 

Can you let us know what output you get when you run the following command 
without any arguments:
./interproscan.sh

Furthermore, can you give more information about your computer setup: That is 
+ what operating system you are using. Give the output of the following 
command: 
    uname -a

+ what Java version you have. Give us the output of the command:
    java -version

+ is this computer part of a cluster? If it is part of a cluster, what cluster 
are you using?

Gift

Original comment by nuka....@gmail.com on 9 Oct 2013 at 3:08

[GoogleCodeExporter]

Original comment by Maxim.Sc...@gmail.com on 15 May 2014 at 9:14

• Added labels: Subject-Installation