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suchapalaver
/
krust
Bioinformatics 101 tool for counting unique k-length substrings in DNA
MIT License
30
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5
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implement map reduce
#43
mjbroerman
opened
1 year ago
1
fix: add KmerByte enum for conversions
#42
suchapalaver
closed
1 year ago
0
fix: add cli mod and fix module visibilities
#41
suchapalaver
closed
1 year ago
0
build: generate lockfile
#40
suchapalaver
closed
1 year ago
0
fix: fix clippy warnings
#39
suchapalaver
closed
1 year ago
0
fix: make minor fixes to README
#38
suchapalaver
closed
1 year ago
0
build: update needletail
#37
suchapalaver
closed
1 year ago
0
fix unnecessary 'into_iter' clippy warnings
#36
suchapalaver
closed
1 year ago
0
Stdin input
#35
suchapalaver
opened
1 year ago
0
feat: use cargo features to select reader
#34
suchapalaver
closed
1 year ago
0
WebAssembly
#33
suchapalaver
opened
1 year ago
0
feat: parallelize sequencereader output
#32
suchapalaver
closed
1 year ago
0
feat: add cli
#31
suchapalaver
closed
1 year ago
0
feat: streamline canonicalization
#30
suchapalaver
closed
1 year ago
0
feat: add cli support to select fasta reader
#29
suchapalaver
closed
1 year ago
0
Feature/add sequence reader trait
#28
suchapalaver
closed
1 year ago
0
Refactor unpacking logic
#27
suchapalaver
closed
1 year ago
0
Feature/single kmer type
#26
suchapalaver
closed
1 year ago
0
feat: outline sequence reader
#25
suchapalaver
closed
1 year ago
0
Feature/output as kmermap method
#24
suchapalaver
closed
1 year ago
0
Feature/reorganize map methods
#23
suchapalaver
closed
1 year ago
0
feat: use needletail for fasta parsing
#22
suchapalaver
closed
1 year ago
1
feat: use bytes crate
#21
suchapalaver
closed
1 year ago
0
Explore using the bytes crate
#20
suchapalaver
closed
1 year ago
1
Use needletail for fasta parsing
#19
suchapalaver
closed
1 year ago
0
Refactor
#18
suchapalaver
closed
1 year ago
0
Use needletail for fasta parsing
#17
suchapalaver
closed
1 year ago
0
Fix startup path types
#16
suchapalaver
closed
1 year ago
0
needletail other then bio to accelerate fasta parsing
#15
jianshu93
closed
1 year ago
3
add `Validity` trait
#14
suchapalaver
closed
2 years ago
0
Try moving `from_utf8` conversion to parallel stage - maybe by chaining another `map`
#13
suchapalaver
closed
2 years ago
0
Try using find to look for `b’N’
#12
suchapalaver
closed
2 years ago
1
Try using a struct to construct kmers
#11
suchapalaver
closed
2 years ago
0
speed up by changing the utf8 processing, reverse-comp, and storage
#10
suchapalaver
closed
3 years ago
0
speed up using hashmaps
#9
suchapalaver
opened
3 years ago
0
look at jellyfish again
#8
suchapalaver
closed
3 years ago
0
checkout sourmash
#7
suchapalaver
opened
3 years ago
0
build kmer indexes
#6
suchapalaver
opened
3 years ago
0
It would be nice to have a better error message when you call it from command-line with wrong arguments
#5
suchapalaver
closed
1 year ago
0
Try using rustfmt to standardise your code style
#4
suchapalaver
closed
3 years ago
0
avoid panicking at all in your library code
#3
suchapalaver
closed
3 years ago
0
You don't need to use extern crate
#2
suchapalaver
closed
3 years ago
0
change the Config struct member kmer_len to be a usize
#1
suchapalaver
closed
3 years ago
0