"analyze this" module

[kevinkle]

Per @chadlaing 's comments:

See if it is possible within the framework of 10mins to do something like:
"We have an unknown sample, and spfy loaded with all public E. coli data. We can:
1) get serotype
2) get known VF and AMR
3) get pan-genome composition (eg. is it close to known reference strains? outbreak strains?)
4) identify Stx-type
5) identify markers for the unknown strain, or group of closely related strains

This shows the capabilites of spfy, but also the usefulness for PHAC

This would have to wrap various existing modules:

• subtyping for 1) & 2)
• James' panseq code
• fishers or phylotyper(Matt) to find closely related strains and then compute common markers (5)
• a new module must be added for 4)

[kevinkle]

Closing issue, misunderstood use case. Also stx-type is given by phylotyper.