[Sweep GHA Fix] The GitHub Actions run failed on 41ab787 (main) with the following error logs: ``` ```

[sweep-ai[bot]]

This pull request was created to fix GitHub Actions on 41ab787.

Description

This pull request includes changes to the Makefile, README.md, condition_prediction/README.md, condition_prediction/sweep/sweep.py, orderly/clean/cleaner.py, and tests/test_clean.py files.

Summary

• Updated the Makefile by adding and modifying several targets related to paper plotting and benchmark generation.
• Updated the README.md file in the condition_prediction directory by providing instructions for running the hyperparameter sweep.
• Modified the sweep.py file in the condition_prediction/sweep directory to include additional imports and functions for generating a search space.
• Updated the cleaner.py file in the orderly/clean directory to include additional logic for removing duplicates and tracking reactions with multiple yields.
• Updated the test_clean.py file in the tests directory to include additional tests for the get_cleaned_df function.