sys-bio / tellurium

Python Environment for Modeling and Simulating Biological Systems
http://tellurium.analogmachine.org/
Apache License 2.0
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error while installing tellurium using pip #594

Open jurquiza opened 1 month ago

jurquiza commented 1 month ago

Collecting python-libnuml>=1.0.0 (from tellurium==2.2.10) Using cached python-libnuml-1.1.6.tar.gz (5.7 kB) Preparing metadata (setup.py) ... error error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [9 lines of output] Traceback (most recent call last): File "", line 2, in File "", line 34, in File "/tmp/pip-install-b9rmal_o/python-libnuml_705c84aba0314e3bb2bd8f4c49e4a3cd/setup.py", line 112, in raise ValueError("Invalid libNuML Source directory, no VERSION.txt file") ValueError: Invalid libNuML Source directory, no VERSION.txt file Using libNuML from: /tmp/pip-install-b9rmal_o/python-libnuml_705c84aba0314e3bb2bd8f4c49e4a3cd Using VERSION.txt: /tmp/pip-install-b9rmal_o/python-libnuml_705c84aba0314e3bb2bd8f4c49e4a3cd/VERSION.txt ['PKG-INFO', 'setup.py', 'python_libnuml.egg-info', 'setup.cfg', 'README.md'] [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed

× Encountered error while generating package metadata. ╰─> See above for output.

note: This is an issue with the package mentioned above, not pip. hint: See above for details.

fbergmann commented 1 month ago

Seems like this has nothing to do with tellurium, pip tried to install libnuml, and it failed to compile on your machine. Could you let us know which:

you are running, then we can make a new release of the dependency to get you going.