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szpiech / selscan

Haplotype based scans for selection
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Header for normalized result of iHS #122

Closed DaisyLyu522 closed 1 month ago

DaisyLyu522 commented 1 month ago

Hi, I normalized my iHS output with norm and generate the following output: rs2822349 14009099 0.183688 0.0597121 0.0873418 -0.16516 0.19922 0 rs2822383 14028297 0.21353 0.0516224 0.0878064 -0.230688 -0.134206 0 rs2822391 14040078 0.45892 0.0426606 0.102998 -0.382801 0.0345435 0 rs8129930 14040570 0.109547 0.050466 0.04369 0.0626167 0.800349 0

I know the first five columns are <locusID > <physicalPos > <1_freq > <ihh1 > <ihh0 > < unstandardized iHS >. What are the rest of the two columns? I guess the seventh column is the normalized iHS?

szpiech commented 1 month ago

Hello,

Yes the 7th column is the normalized iHS score (in frequency bins).

Zachary

Le ven. 26 juil. 2024 à 14:37, DaisyLyu522 @.***> a écrit :

Hi, I normalized my iHS output with norm and generate the following output: rs2822349 14009099 0.183688 0.0597121 0.0873418 -0.16516 0.19922 0 rs2822383 14028297 0.21353 0.0516224 0.0878064 -0.230688 -0.134206 0 rs2822391 14040078 0.45892 0.0426606 0.102998 -0.382801 0.0345435 0 rs8129930 14040570 0.109547 0.050466 0.04369 0.0626167 0.800349 0

I know the first five columns are <1_freq >

< unstandardized iHS >. What are the rest of the two columns? I guess the sixth column is the normalized iHS? — Reply to this email directly, view it on GitHub , or unsubscribe . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>
DaisyLyu522 commented 1 month ago

Thanks for your explanation!