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taowenmicro / ggClusterNet

Microbial ecological network visualization clustering
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The function network.2 is not working #20

Open halimaml opened 6 months ago

halimaml commented 6 months ago

Hello,

I am trying the use the function network.2 of the ggClusterNet package and I am getting this error: Error in h(simpleError(msg, call)) : error in evaluating the argument 'object' in selecting a method for function 'sample_data': undefined columns selected

Here is my code:

Phyloseq

compost_OTU <- otu_table(otus, taxa_are_rows=T) compost_metadat <- sample_data(metadat,errorIfNULL=TRUE) compost_taxo <- tax_table(as.matrix(taxon), errorIfNULL=TRUE) data16s <- phyloseq(compost_taxo,compost_OTU,compost_metadat)

Construct the network using Network.2()

result = network.2(ps = data16s,N = 100,r.threshold=0.6,big = T, select_layout = T, p.threshold=0.05,label = FALSE,path = path ,zipi = F)

Can you please help me figure out where the problem is?

Here is a part of my metadat:

compost_metadat Sample Data: [30 samples by 2 sample variables]: field ID C7.C.1.Dairy conventional C7.C.1.Dairy C8.C.2.Control conventional C8.C.2.Control C9.C.3.Plant conventional C9.C.3.Plant

Thank you in Advance