Minor refactor of the spectrum solver

andrewfullard commented 3 months ago

:pencil: Description

Type: :roller_coaster: infrastructure

Adjustment to the spectrum solver to consolidate property assignments and factor out luminosity integration calculations (which do not use anything relevant from the spectrum solver). setup_optional_spectra is may be subsumed into solve eventually.

:vertical_traffic_light: Testing

How did you test these changes?

[ ] Testing pipeline
[ ] Other method (describe)
[ ] My changes can't be tested (explain why)

:ballot_box_with_check: Checklist

[x] I requested two reviewers for this pull request
[x] I updated the documentation according to my changes
[x] I built the documentation by applying the build_docs label

Note: If you are not allowed to perform any of these actions, ping (@) a contributor.

tardis-bot commented 3 months ago

*beep* *bop* Hi human, I ran ruff on the latest commit (8f750b2af8878abf754940ba86790b8af118704a). Here are the outputs produced. Results can also be downloaded as artifacts here. Summarised output:

```diff 158 F401 [*] `PySide2.QtCore` imported but unused 130 I001 [*] Import block is un-sorted or un-formatted 123 F405 [ ] `Abundance` may be undefined, or defined from star imports 48 RET505 [ ] Unnecessary `elif` after `return` statement 47 D202 [*] No blank lines allowed after function docstring (found 1) 40 G004 [ ] Logging statement uses f-string 35 UP008 [*] Use `super()` instead of `super(__class__, self)` 28 F821 [ ] Undefined name `GET_NEAREST_LINE_REDWARD_FUNCTION` 22 F403 [ ] `from astropy.constants.astropyconst13 import *` used; unable to detect undefined names 20 INP001 [ ] File `.ci-helpers/update_credits.py` is part of an implicit namespace package. Add an `__init__.py`. 19 E712 [*] Avoid equality comparisons to `False`; use `if not ...:` for false checks 19 F811 [ ] Redefinition of unused `OpacityState` from line 14 18 UP004 [*] Class `ConvergencePlots` inherits from `object` 16 W291 [*] Trailing whitespace 15 B011 [*] Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` 15 PT015 [ ] Assertion always fails, replace with `pytest.fail()` 13 UP015 [*] Unnecessary open mode parameters 13 UP031 [*] Use format specifiers instead of percent format 12 D209 [*] Multi-line docstring closing quotes should be on a separate line 11 RET506 [ ] Unnecessary `elif` after `raise` statement 11 E722 [ ] Do not use bare `except` 9 C408 [*] Unnecessary `dict` call (rewrite as a literal) 9 E402 [ ] Module level import not at top of file 9 UP032 [*] Use f-string instead of `format` call 8 B019 [ ] Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks 6 UP024 [*] Replace aliased errors with `OSError` 5 ISC003 [ ] Explicitly concatenated string should be implicitly concatenated 5 D411 [*] Missing blank line before section ("Parameters") 4 FA100 [ ] Add `from __future__ import annotations` to simplify `typing.Tuple` 4 ICN001 [*] `matplotlib` should be imported as `mpl` 4 PIE808 [*] Unnecessary `start` argument in `range` 4 FLY002 [*] Consider `"\n---\n"` instead of string join 4 D409 [*] Section underline should match the length of its name ("Parameters") 4 D412 [*] No blank lines allowed between a section header and its content ("Parameters") 4 PLR1711 [*] Useless `return` statement at end of function 4 PLW0127 [ ] Self-assignment of variable `atom_data` 3 EXE001 [ ] Shebang is present but file is not executable 3 PIE790 [*] Unnecessary `pass` statement 3 RET508 [ ] Unnecessary `elif` after `break` statement 3 PTH117 [ ] `os.path.isabs()` should be replaced by `Path.is_absolute()` 3 D406 [*] Section name should end with a newline ("Returns") 3 D407 [*] Missing dashed underline after section ("Returns") 3 F631 [ ] Assert test is a non-empty tuple, which is always `True` 3 PGH004 [ ] Use specific rule codes when using `noqa` 2 ANN204 [ ] Missing return type annotation for special method `__getitem__` 2 B010 [*] Do not call `setattr` with a constant attribute value. It is not any safer than normal property access. 2 C403 [*] Unnecessary `list` comprehension (rewrite as a `set` comprehension) 2 G001 [ ] Logging statement uses `str.format` 2 PT013 [ ] Incorrect import of `pytest`; use `import pytest` instead 2 N812 [ ] Lowercase `__path__` imported as non-lowercase `TARDIS_PATH` 2 N999 [ ] Invalid module name: 'GXPacket' 2 E713 [*] Test for membership should be `not in` 2 W293 [*] Blank line contains whitespace 2 UP030 [*] Use implicit references for positional format fields 1 ANN205 [ ] Missing return type annotation for staticmethod `get_relative_path` 1 S113 [ ] Probable use of requests call without timeout 1 S604 [ ] Function call with truthy `shell` parameter identified, security issue 1 S605 [ ] Starting a process with a shell: seems safe, but may be changed in the future; consider rewriting without `shell` 1 B009 [*] Do not call `getattr` with a constant attribute value. It is not any safer than normal property access. 1 B017 [ ] `pytest.raises(Exception)` should be considered evil 1 B018 [ ] Found useless expression. Either assign it to a variable or remove it. 1 B020 [ ] Loop control variable `isotope_dict` overrides iterable it iterates 1 C405 [*] Unnecessary `list` literal (rewrite as a `set` literal) 1 C414 [*] Unnecessary `list` call within `set()` 1 C416 [*] Unnecessary `list` comprehension (rewrite using `list()`) 1 DTZ011 [ ] `datetime.date.today()` used 1 G010 [*] Logging statement uses `warn` instead of `warning` 1 PT014 [*] Duplicate of test case at index 1 in `@pytest_mark.parametrize` 1 PT020 [ ] `@pytest.yield_fixture` is deprecated, use `@pytest.fixture` 1 PT021 [ ] Use `yield` instead of `request.addfinalizer` 1 SIM103 [*] Return the condition directly 1 SIM210 [*] Remove unnecessary `True if ... else False` 1 TD006 [*] Invalid TODO capitalization: `todo` should be `TODO` 1 NPY201 [ ] `np.recfromtxt` will be removed in NumPy 2.0. Use `np.genfromtxt` instead. 1 PERF102 [*] When using only the values of a dict use the `values()` method 1 E401 [*] Multiple imports on one line 1 D204 [*] 1 blank line required after class docstring 1 PLR0911 [ ] Too many return statements (8 > 6) 1 UP009 [*] UTF-8 encoding declaration is unnecessary 1 UP028 [*] Replace `yield` over `for` loop with `yield from` 1 UP034 [*] Avoid extraneous parentheses 1 RUF015 [*] Prefer `next(iter(unique_v))` over single element slice 1 TRY300 [ ] Consider moving this statement to an `else` block ```

Complete output(might be large):

```diff .ci-helpers/get_current_version.py:1:1: EXE001 Shebang is present but file is not executable .ci-helpers/get_current_version.py:3:1: I001 [*] Import block is un-sorted or un-formatted .ci-helpers/get_min_docstr_cov.py:1:1: EXE001 Shebang is present but file is not executable .ci-helpers/get_min_docstr_cov.py:3:1: I001 [*] Import block is un-sorted or un-formatted .ci-helpers/get_min_docstr_cov.py:5:1: F403 `from parse import *` used; unable to detect undefined names .ci-helpers/get_min_docstr_cov.py:8:10: F405 `parse` may be undefined, or defined from star imports .ci-helpers/get_next_version.py:1:1: EXE001 Shebang is present but file is not executable .ci-helpers/get_next_version.py:3:1: I001 [*] Import block is un-sorted or un-formatted .ci-helpers/update_credits.py:1:1: INP001 File `.ci-helpers/update_credits.py` is part of an implicit namespace package. Add an `__init__.py`. .ci-helpers/update_credits.py:1:1: D209 [*] Multi-line docstring closing quotes should be on a separate line .ci-helpers/update_credits.py:15:5: D202 [*] No blank lines allowed after function docstring (found 1) .ci-helpers/update_credits.py:15:5: D209 [*] Multi-line docstring closing quotes should be on a separate line .ci-helpers/update_credits.py:20:12: DTZ011 `datetime.date.today()` used .ci-helpers/update_credits.py:24:20: S113 Probable use of requests call without timeout .ci-helpers/update_credits.py:46:91: W291 Trailing whitespace benchmarks/benchmark_base.py:30:9: ANN205 Missing return type annotation for staticmethod `get_relative_path` benchmarks/benchmark_base.py:77:9: RET506 Unnecessary `else` after `raise` statement benchmarks/opacities_opacity.py:7:40: F401 [*] `tardis.opacities.opacities.compton_opacity_calculation` imported but unused benchmarks/opacities_opacity_state.py:15:5: D204 [*] 1 blank line required after class docstring benchmarks/opacities_opacity_state.py:20:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks benchmarks/run_tardis.py:5:1: I001 [*] Import block is un-sorted or un-formatted benchmarks/spectrum_formal_integral.py:22:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks benchmarks/transport_geometry_calculate_distances.py:13:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks benchmarks/transport_montecarlo_estimators_radfield_estimator_calcs.py:20:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks benchmarks/transport_montecarlo_interaction.py:16:15: W291 [*] Trailing whitespace benchmarks/transport_montecarlo_interaction.py:18:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks benchmarks/transport_montecarlo_main_loop.py:20:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks benchmarks/transport_montecarlo_packet_trackers.py:20:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks benchmarks/transport_montecarlo_vpacket.py:54:5: B019 Use of `functools.lru_cache` or `functools.cache` on methods can lead to memory leaks docs/conf.py:1:1: UP009 [*] UTF-8 encoding declaration is unnecessary docs/conf.py:28:1: I001 [*] Import block is un-sorted or un-formatted docs/conf.py:31:8: F401 [*] `tardis` imported but unused docs/conf.py:37:43: PGH004 Use specific rule codes when using `noqa` docs/conf.py:47:6: UP015 [*] Unnecessary open mode parameters docs/conf.py:68:1: F405 `exclude_patterns` may be undefined, or defined from star imports docs/conf.py:69:1: F405 `exclude_patterns` may be undefined, or defined from star imports docs/conf.py:70:1: F405 `exclude_patterns` may be undefined, or defined from star imports docs/conf.py:71:1: F405 `exclude_patterns` may be undefined, or defined from star imports docs/conf.py:72:1: F405 `exclude_patterns` may be undefined, or defined from star imports docs/conf.py:139:1: W293 Blank line contains whitespace docs/conf.py:174:1: W293 Blank line contains whitespace docs/conf.py:191:13: UP030 Use implicit references for positional format fields docs/conf.py:191:13: UP032 [*] Use f-string instead of `format` call docs/conf.py:218:1: E402 Module level import not at top of file docs/conf.py:291:4: E712 Avoid equality comparisons to `True`; use `if toml_config_tool_dict["tardis"]['edit_on_github']:` for truth checks docs/conf.py:352:1: E402 Module level import not at top of file docs/conf.py:367:10: UP015 [*] Unnecessary open mode parameters, use ""w"" docs/conf.py:382:10: UP015 [*] Unnecessary open mode parameters, use ""w"" docs/physics/pyplot/lte_ionization_balance.py:1:1: I001 [*] Import block is un-sorted or un-formatted docs/physics/pyplot/lte_ionization_balance.py:1:8: F401 [*] `os` imported but unused docs/physics/pyplot/lte_ionization_balance.py:22:31: F821 Undefined name `atom_fname` docs/physics/pyplot/lte_ionization_balance.py:73:9: UP031 Use format specifiers instead of percent format docs/physics/pyplot/lte_ionization_balance.py:74:15: UP031 Use format specifiers instead of percent format docs/physics/pyplot/nebular_ionization_balance.py:1:1: I001 [*] Import block is un-sorted or un-formatted docs/physics/pyplot/nebular_ionization_balance.py:33:18: F821 Undefined name `plasma` docs/physics/pyplot/nebular_ionization_balance.py:71:9: UP031 Use format specifiers instead of percent format docs/physics/pyplot/nebular_ionization_balance.py:72:15: UP031 Use format specifiers instead of percent format docs/physics/pyplot/nebular_ionization_balance.py:117:9: UP031 Use format specifiers instead of percent format docs/physics/pyplot/nebular_ionization_balance.py:118:15: UP031 Use format specifiers instead of percent format docs/physics/pyplot/plot_mu_in_out_packet.py:1:1: F403 `from pylab import *` used; unable to detect undefined names docs/physics/pyplot/plot_mu_in_out_packet.py:1:1: I001 [*] Import block is un-sorted or un-formatted docs/physics/pyplot/plot_mu_in_out_packet.py:5:1: PLW0127 Self-assignment of variable `x` docs/physics/pyplot/plot_mu_in_out_packet.py:5:4: PLW0127 Self-assignment of variable `y` docs/physics/pyplot/plot_mu_in_out_packet.py:5:15: F405 `mgrid` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:10:1: F405 `xlabel` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:11:1: F405 `ylabel` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:12:1: F405 `imshow` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:12:8: F405 `np` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:13:1: F405 `colorbar` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:14:1: F405 `show` may be undefined, or defined from star imports setup.py:7:1: I001 [*] Import block is un-sorted or un-formatted tardis/__init__.py:6:31: PGH004 Use specific rule codes when using `noqa` tardis/__init__.py:25:1: I001 [*] Import block is un-sorted or un-formatted tardis/__init__.py:32:25: F401 `tardis.base.run_tardis` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/__init__.py:33:46: F401 `tardis.io.util.yaml_load_file` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/_astropy_init.py:12:1: I001 [*] Import block is un-sorted or un-formatted tardis/analysis.py:96:9: E722 Do not use bare `except` tardis/analysis.py:110:9: E722 Do not use bare `except` tardis/analysis.py:121:9: E722 Do not use bare `except` tardis/analysis.py:136:9: E722 Do not use bare `except` tardis/analysis.py:374:9: RET505 Unnecessary `else` after `return` statement tardis/analysis.py:396:9: RET505 Unnecessary `else` after `return` statement tardis/analysis.py:421:9: RET505 Unnecessary `else` after `return` statement tardis/analysis/opacities.py:1:1: INP001 File `tardis/analysis/opacities.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/analysis/opacities.py:1:1: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/analysis/opacities.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/analysis/opacities.py:12:26: UP004 [*] Class `opacity_calculator` inherits from `object` tardis/analysis/opacities.py:225:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/analysis/opacities.py:274:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/analysis/opacities.py:282:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/analysis/opacities.py:329:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/analysis/opacities.py:360:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/analysis/opacities.py:388:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/base.py:5:1: I001 [*] Import block is un-sorted or un-formatted tardis/base.py:73:1: I001 [*] Import block is un-sorted or un-formatted tardis/base.py:101:13: PLW0127 Self-assignment of variable `atom_data` tardis/conftest.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/conftest.py:11:1: F403 `from tardis.tests.fixtures.atom_data import *` used; unable to detect undefined names tardis/conftest.py:30:49: PGH004 Use specific rule codes when using `noqa` tardis/conftest.py:32:9: F821 Undefined name `pytest_report_header` tardis/conftest.py:145:5: RET505 Unnecessary `else` after `return` statement tardis/conftest.py:169:1: PT020 `@pytest.yield_fixture` is deprecated, use `@pytest.fixture` tardis/conftest.py:240:19: F405 `deepcopy` may be undefined, or defined from star imports tardis/conftest.py:249:19: F405 `deepcopy` may be undefined, or defined from star imports tardis/conftest.py:278:19: F405 `deepcopy` may be undefined, or defined from star imports tardis/constants.py:1:1: F403 `from astropy.constants.astropyconst13 import *` used; unable to detect undefined names tardis/energy_input/GXPacket.py:1:1: N999 Invalid module name: 'GXPacket' tardis/energy_input/GXPacket.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/GXPacket.py:40:16: UP004 [*] Class `GXPacket` inherits from `object` tardis/energy_input/GXPacket.py:72:9: D407 [*] Missing dashed underline after section ("Returns") tardis/energy_input/GXPacket.py:72:9: D406 [*] Section name should end with a newline ("Returns") tardis/energy_input/GXPacket.py:198:13: F821 Undefined name `get_chain_decay_power_per_ejectamass` tardis/energy_input/GXPacket.py:199:17: F821 Undefined name `inventory` tardis/energy_input/energy_source.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/energy_source.py:96:11: E712 Avoid equality comparisons to `True`; use `if check:` for truth checks tardis/energy_input/energy_source.py:112:16: C416 Unnecessary `list` comprehension (rewrite using `list()`) tardis/energy_input/energy_source.py:198:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/energy_input/gamma_packet_loop.py:273:17: RET508 Unnecessary `else` after `break` statement tardis/energy_input/gamma_ray_channel.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/gamma_ray_channel.py:2:17: F401 [*] `numpy` imported but unused tardis/energy_input/gamma_ray_channel.py:54:5: D411 [*] Missing blank line before section ("Returns") tardis/energy_input/gamma_ray_channel.py:111:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/energy_input/gamma_ray_estimators.py:47:18: F821 Undefined name `GET_NEAREST_LINE_REDWARD_FUNCTION` tardis/energy_input/gamma_ray_grid.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/gamma_ray_grid.py:14:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/energy_input/gamma_ray_transport.py:456:39: PERF102 When using only the values of a dict use the `values()` method tardis/energy_input/main_gamma_ray_loop.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/main_gamma_ray_loop.py:8:5: F401 [*] `tardis.energy_input.energy_source.get_nuclear_lines_database` imported but unused tardis/energy_input/main_gamma_ray_loop.py:12:5: F401 [*] `tardis.energy_input.gamma_ray_channel.calculate_total_decays` imported but unused tardis/energy_input/main_gamma_ray_loop.py:13:5: F401 [*] `tardis.energy_input.gamma_ray_channel.create_inventories_dict` imported but unused tardis/energy_input/main_gamma_ray_loop.py:14:5: F401 [*] `tardis.energy_input.gamma_ray_channel.create_isotope_dicts` imported but unused tardis/energy_input/main_gamma_ray_loop.py:152:17: G004 Logging statement uses f-string tardis/energy_input/main_gamma_ray_loop.py:156:17: G004 Logging statement uses f-string tardis/energy_input/main_gamma_ray_loop.py:158:17: G004 Logging statement uses f-string tardis/energy_input/main_gamma_ray_loop.py:213:17: G004 Logging statement uses f-string tardis/energy_input/main_gamma_ray_loop.py:214:17: G004 Logging statement uses f-string tardis/energy_input/tests/conftest.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/tests/conftest.py:24:9: S604 Function call with truthy `shell` parameter identified, security issue tardis/energy_input/tests/test_energy_source.py:35:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_energy_source.py:35:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_energy_source.py:41:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_energy_source.py:41:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_energy_source.py:47:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_energy_source.py:47:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_gamma_ray_channel.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/tests/test_gamma_ray_channel.py:8:30: F401 [*] `radioactivedecay.converters` imported but unused tardis/energy_input/tests/test_gamma_ray_channel.py:13:5: F401 [*] `tardis.energy_input.energy_source.get_nuclear_lines_database` imported but unused tardis/energy_input/tests/test_gamma_ray_channel.py:118:9: B020 Loop control variable `isotope_dict` overrides iterable it iterates tardis/energy_input/tests/test_gamma_ray_grid.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/tests/test_gamma_ray_grid.py:3:17: F401 [*] `numpy` imported but unused tardis/energy_input/tests/test_gamma_ray_grid.py:6:5: F401 [*] `tardis.energy_input.gamma_ray_grid.calculate_distance_radial` imported but unused tardis/energy_input/tests/test_gamma_ray_grid.py:7:5: F401 [*] `tardis.energy_input.gamma_ray_grid.distance_trace` imported but unused tardis/energy_input/tests/test_gamma_ray_grid.py:15:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_gamma_ray_grid.py:15:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_gamma_ray_grid.py:21:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_gamma_ray_grid.py:21:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_gamma_ray_interactions.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/energy_input/tests/test_gamma_ray_interactions.py:6:5: F401 [*] `tardis.energy_input.gamma_ray_interactions.compton_scatter` imported but unused tardis/energy_input/tests/test_gamma_ray_interactions.py:18:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_gamma_ray_interactions.py:18:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_gamma_ray_interactions.py:24:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_gamma_ray_interactions.py:24:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_gamma_ray_transport.py:4:17: F401 [*] `numpy` imported but unused tardis/energy_input/tests/test_gamma_ray_transport.py:5:25: F401 [*] `numpy.testing` imported but unused tardis/energy_input/tests/test_gamma_ray_transport.py:7:28: F401 [*] `radioactivedecay` imported but unused tardis/energy_input/tests/test_gamma_ray_transport.py:8:30: F401 [*] `radioactivedecay.converters` imported but unused tardis/energy_input/tests/test_gamma_ray_transport.py:11:5: F401 [*] `tardis.energy_input.gamma_ray_channel.calculate_total_decays` imported but unused tardis/energy_input/tests/test_gamma_ray_transport.py:12:5: F401 [*] `tardis.energy_input.gamma_ray_channel.create_inventories_dict` imported but unused tardis/energy_input/tests/test_gamma_ray_transport.py:13:5: F401 [*] `tardis.energy_input.gamma_ray_channel.create_isotope_dicts` imported but unused tardis/energy_input/tests/test_util.py:38:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_util.py:38:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_util.py:44:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_util.py:44:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_util.py:50:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_util.py:50:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/tests/test_util.py:56:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/energy_input/tests/test_util.py:56:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/energy_input/util.py:383:5: RET505 Unnecessary `elif` after `return` statement tardis/grid/__init__.py:2:41: W291 Trailing whitespace tardis/grid/__init__.py:3:37: W291 Trailing whitespace tardis/grid/__init__.py:7:1: F403 `from tardis.grid.base import *` used; unable to detect undefined names tardis/grid/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/grid/base.py:7:33: F401 [*] `tardis.io.atom_data.AtomData` imported but unused tardis/grid/base.py:33:5: PLR1711 [*] Useless `return` statement at end of function tardis/grid/base.py:70:9: PLR1711 [*] Useless `return` statement at end of function tardis/grid/base.py:147:9: PLR1711 [*] Useless `return` statement at end of function tardis/grid/tests/test_grid.py:1:1: INP001 File `tardis/grid/tests/test_grid.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/grid/tests/test_grid.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/grid/tests/test_grid.py:8:21: F811 [*] Redefinition of unused `Path` from line 1 tardis/gui/__init__.py:4:57: W291 Trailing whitespace tardis/gui/__init__.py:5:60: W291 Trailing whitespace tardis/gui/__init__.py:6:56: W291 Trailing whitespace tardis/gui/datahandler.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/datahandler.py:4:17: F401 [*] `numpy` imported but unused tardis/gui/datahandler.py:5:8: ICN001 `matplotlib` should be imported as `mpl` tardis/gui/datahandler.py:6:28: F401 [*] `matplotlib.pylab` imported but unused tardis/gui/datahandler.py:10:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/datahandler.py:12:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/datahandler.py:19:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/datahandler.py:19:8: F401 [*] `yaml` imported but unused tardis/gui/datahandler.py:21:20: F401 [*] `tardis.run_tardis` imported but unused tardis/gui/datahandler.py:22:32: F401 [*] `tardis.gui.widgets.MatplotlibWidget` imported but unused tardis/gui/datahandler.py:22:50: F401 [*] `tardis.gui.widgets.ModelViewer` imported but unused tardis/gui/datahandler.py:22:63: F401 [*] `tardis.gui.widgets.ShellInfo` imported but unused tardis/gui/datahandler.py:23:32: F401 [*] `tardis.gui.widgets.LineInfo` imported but unused tardis/gui/datahandler.py:23:42: F401 [*] `tardis.gui.widgets.LineInteractionTables` imported but unused tardis/gui/datahandler.py:37:12: UP004 [*] Class `Node` inherits from `object` tardis/gui/datahandler.py:113:9: RET505 Unnecessary `else` after `return` statement tardis/gui/datahandler.py:145:9: RET505 Unnecessary `else` after `return` statement tardis/gui/datahandler.py:199:9: RET505 Unnecessary `else` after `return` statement tardis/gui/datahandler.py:203:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/gui/datahandler.py:271:9: RET505 Unnecessary `else` after `return` statement tardis/gui/datahandler.py:412:9: RET505 Unnecessary `elif` after `return` statement tardis/gui/datahandler.py:436:9: RET505 Unnecessary `else` after `return` statement tardis/gui/datahandler.py:503:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/datahandler.py:518:9: PLR0911 Too many return statements (8 > 6) tardis/gui/datahandler.py:523:13: RET505 Unnecessary `elif` after `return` statement tardis/gui/datahandler.py:526:17: RET505 Unnecessary `else` after `return` statement tardis/gui/datahandler.py:536:13: RET505 Unnecessary `elif` after `return` statement tardis/gui/datahandler.py:547:9: RET505 Unnecessary `elif` after `return` statement tardis/gui/datahandler.py:552:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/gui/datahandler.py:556:9: RET505 Unnecessary `elif` after `return` statement tardis/gui/interface.py:6:25: F401 [*] `PySide2.QtCore` imported but unused tardis/gui/interface.py:16:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/interface.py:23:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/tests/test_gui.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/tests/test_gui.py:5:25: F401 [*] `astropy.units` imported but unused tardis/gui/tests/test_gui.py:8:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/widgets.py:6:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/widgets.py:8:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/widgets.py:16:1: I001 [*] Import block is un-sorted or un-formatted tardis/gui/widgets.py:16:8: ICN001 `matplotlib` should be imported as `mpl` tardis/gui/widgets.py:17:1: F403 `from matplotlib.figure import *` used; unable to detect undefined names tardis/gui/widgets.py:24:32: F401 [*] `matplotlib.patches.Circle` imported but unused tardis/gui/widgets.py:29:30: F401 [*] `tardis.util` imported but unused tardis/gui/widgets.py:36:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/gui/widgets.py:43:23: F405 `Figure` may be undefined, or defined from star imports tardis/gui/widgets.py:54:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:55:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:58:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:164:27: C408 Unnecessary `dict` call (rewrite as a literal) tardis/gui/widgets.py:167:26: C408 Unnecessary `dict` call (rewrite as a literal) tardis/gui/widgets.py:168:23: C408 Unnecessary `dict` call (rewrite as a literal) tardis/gui/widgets.py:186:9: RET505 Unnecessary `elif` after `return` statement tardis/gui/widgets.py:198:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:226:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:229:22: F405 `yaml` may be undefined, or defined from star imports tardis/gui/widgets.py:229:61: F405 `yaml` may be undefined, or defined from star imports tardis/gui/widgets.py:353:24: F405 `TreeModel` may be undefined, or defined from star imports tardis/gui/widgets.py:358:38: F405 `TreeDelegate` may be undefined, or defined from star imports tardis/gui/widgets.py:429:35: UP024 [*] Replace aliased errors with `OSError` tardis/gui/widgets.py:444:9: PIE790 [*] Unnecessary `pass` statement tardis/gui/widgets.py:528:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/gui/widgets.py:646:41: F405 `np` may be undefined, or defined from star imports tardis/gui/widgets.py:657:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/gui/widgets.py:660:41: F405 `np` may be undefined, or defined from star imports tardis/gui/widgets.py:688:41: F405 `np` may be undefined, or defined from star imports tardis/gui/widgets.py:815:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:851:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/gui/widgets.py:927:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/gui/widgets.py:929:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:1124:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/gui/widgets.py:1231:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/atom_data/__init__.py:2:38: W291 Trailing whitespace tardis/io/atom_data/__init__.py:5:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/atom_data/__init__.py:5:38: F401 `tardis.io.atom_data.base.AtomData` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/atom_data/__init__.py:6:51: F401 `tardis.io.atom_data.atom_web_download.download_atom_data` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/atom_data/atom_web_download.py:51:13: G004 Logging statement uses f-string tardis/io/atom_data/atom_web_download.py:58:17: G004 Logging statement uses f-string tardis/io/atom_data/base.py:171:22: C408 Unnecessary `dict` call (rewrite as a literal) tardis/io/atom_data/base.py:172:24: C408 Unnecessary `list` call (rewrite as a literal) tardis/io/atom_data/base.py:181:34: G004 Logging statement uses f-string tardis/io/atom_data/base.py:259:17: G004 Logging statement uses f-string tardis/io/atom_data/base.py:263:21: UP030 Use implicit references for positional format fields tardis/io/atom_data/base.py:263:21: G001 Logging statement uses `str.format` tardis/io/atom_data/util.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/atom_data/util.py:8:5: F401 [*] `tardis.io.atom_data.atom_web_download.download_atom_data` imported but unused tardis/io/atom_data/util.py:15:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/atom_data/util.py:37:13: G004 Logging statement uses f-string tardis/io/atom_data/util.py:44:15: UP024 [*] Replace aliased errors with `OSError` tardis/io/atom_data/util.py:50:11: UP024 [*] Replace aliased errors with `OSError` tardis/io/configuration/config_internal.py:1:1: E401 [*] Multiple imports on one line tardis/io/configuration/config_internal.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/configuration/config_internal.py:6:20: N812 Lowercase `__path__` imported as non-lowercase `TARDIS_PATH` tardis/io/configuration/config_internal.py:23:13: G004 Logging statement uses f-string tardis/io/configuration/config_internal.py:36:13: G004 Logging statement uses f-string tardis/io/configuration/config_internal.py:49:15: UP024 [*] Replace aliased errors with `OSError` tardis/io/configuration/config_reader.py:53:29: G004 Logging statement uses f-string tardis/io/configuration/config_reader.py:88:21: C408 Unnecessary `dict` call (rewrite as a literal) tardis/io/configuration/config_reader.py:112:21: UP008 Use `super()` instead of `super(__class__, self)` tardis/io/configuration/config_reader.py:117:9: RET505 Unnecessary `else` after `return` statement tardis/io/configuration/config_reader.py:118:18: UP008 Use `super()` instead of `super(__class__, self)` tardis/io/configuration/config_reader.py:141:13: RET505 Unnecessary `else` after `return` statement tardis/io/configuration/config_reader.py:218:29: G004 Logging statement uses f-string tardis/io/configuration/config_reader.py:450:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/io/configuration/config_validator.py:43:9: UP028 Replace `yield` over `for` loop with `yield from` tardis/io/configuration/tests/test_config_reader.py:1:1: INP001 File `tardis/io/configuration/tests/test_config_reader.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/configuration/tests/test_config_reader.py:2:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/configuration/tests/test_config_reader.py:2:8: F401 [*] `os` imported but unused tardis/io/configuration/tests/test_config_reader.py:3:18: F401 [*] `attr.validate` imported but unused tardis/io/configuration/tests/test_config_validator.py:1:1: INP001 File `tardis/io/configuration/tests/test_config_validator.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/configuration/tests/test_configuration_namespace.py:1:1: INP001 File `tardis/io/configuration/tests/test_configuration_namespace.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/configuration/tests/test_configuration_namespace.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/logger/__init__.py:2:29: W291 Trailing whitespace tardis/io/logger/colored_logger.py:83:9: PLR1711 [*] Useless `return` statement at end of function tardis/io/logger/logger.py:4:63: F401 [*] `tardis.io.logger.colored_logger.formatter_message` imported but unused tardis/io/logger/logger.py:28:17: UP004 [*] Class `FilterLog` inherits from `object` tardis/io/logger/logger.py:66:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/logger/logger.py:118:12: E713 [*] Test for membership should be `not in` tardis/io/logger/montecarlo_tracking.py:2:23: F401 [*] `functools.wraps` imported but unused tardis/io/logger/montecarlo_tracking.py:63:30: G004 Logging statement uses f-string tardis/io/logger/montecarlo_tracking.py:64:30: G004 Logging statement uses f-string tardis/io/logger/tests/test_logging.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/logger/tests/test_logging.py:8:8: F811 [*] Redefinition of unused `pytest` from line 1 tardis/io/logger/tests/test_logging.py:70:16: E712 Avoid equality comparisons to `True`; use `if specific_log_level:` for truth checks tardis/io/logger/tests/test_logging.py:88:16: E712 Avoid equality comparisons to `True`; use `if specific_log_level:` for truth checks tardis/io/logger/tests/test_logging.py:110:16: E712 Avoid equality comparisons to `True`; use `if specific_log_level:` for truth checks tardis/io/model/__init__.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/__init__.py:1:44: F401 `tardis.io.model.readers.stella.read_stella_model` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/model/__init__.py:4:44: F401 `tardis.io.model.readers.cmfgen.read_cmfgen_model` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/model/parse_atom_data.py:40:21: G004 Logging statement uses f-string tardis/io/model/parse_density_configuration.py:23:6: FA100 Add `from __future__ import annotations` to simplify `typing.Tuple` tardis/io/model/parse_geometry_configuration.py:50:12: PTH117 `os.path.isabs()` should be replaced by `Path.is_absolute()` tardis/io/model/parse_mass_fraction_configuration.py:62:12: PTH117 `os.path.isabs()` should be replaced by `Path.is_absolute()` tardis/io/model/parse_radiation_field_configuration.py:118:13: G004 Logging statement uses f-string tardis/io/model/readers/arepo.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/arepo.py:19:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/arepo.py:129:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/arepo.py:178:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/arepo.py:256:19: UP032 [*] Use f-string instead of `format` call tardis/io/model/readers/arepo.py:268:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/arepo.py:384:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/arepo.py:429:25: UP032 [*] Use f-string instead of `format` call tardis/io/model/readers/arepo.py:432:25: UP032 [*] Use f-string instead of `format` call tardis/io/model/readers/arepo.py:453:29: UP031 Use format specifiers instead of percent format tardis/io/model/readers/arepo.py:454:29: UP031 Use format specifiers instead of percent format tardis/io/model/readers/arepo.py:461:17: FLY002 Consider `"\n---\n"` instead of string join tardis/io/model/readers/arepo.py:472:35: UP031 Use format specifiers instead of percent format tardis/io/model/readers/arepo.py:473:31: UP031 Use format specifiers instead of percent format tardis/io/model/readers/arepo.py:501:29: UP031 Use format specifiers instead of percent format tardis/io/model/readers/arepo.py:502:25: UP031 Use format specifiers instead of percent format tardis/io/model/readers/arepo.py:537:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/arepo.py:707:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/artis.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/artis.py:7:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/base.py:25:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/blondin_toymodel.py:31:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/blondin_toymodel.py:94:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/cmfgen.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/cmfgen.py:4:21: F401 [*] `pathlib.Path` imported but unused tardis/io/model/readers/cmfgen.py:27:5: D412 [*] No blank lines allowed between a section header and its content ("Parameters") tardis/io/model/readers/cmfgen_deprecated.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/cmfgen_deprecated.py:73:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/csvy.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/csvy.py:100:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/model/readers/generic_readers.py:1:21: F401 [*] `pathlib.Path` imported but unused tardis/io/model/readers/generic_readers.py:21:6: FA100 Add `from __future__ import annotations` to simplify `typing.Tuple` tardis/io/model/readers/generic_readers.py:48:12: NPY201 `np.recfromtxt` will be removed in NumPy 2.0. Use `np.genfromtxt` instead. tardis/io/model/readers/stella.py:32:5: D412 [*] No blank lines allowed between a section header and its content ("Parameters") tardis/io/model/readers/stella.py:53:17: RET508 Unnecessary `else` after `break` statement tardis/io/model/readers/tests/test_arepo_parser.py:1:1: INP001 File `tardis/io/model/readers/tests/test_arepo_parser.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/model/readers/tests/test_arepo_parser.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/tests/test_arepo_parser.py:16:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/tests/test_arepo_parser.py:48:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/tests/test_arepo_parser.py:59:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/tests/test_arepo_parser.py:89:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/tests/test_arepo_parser.py:99:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/tests/test_arepo_parser.py:109:10: UP015 [*] Unnecessary open mode parameters tardis/io/model/readers/tests/test_ascii_readers.py:1:1: INP001 File `tardis/io/model/readers/tests/test_ascii_readers.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/model/readers/tests/test_ascii_readers.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/tests/test_ascii_readers.py:3:20: F401 [*] `tardis.io` imported but unused tardis/io/model/readers/tests/test_ascii_readers.py:10:17: F401 [*] `numpy` imported but unused tardis/io/model/readers/tests/test_ascii_readers.py:12:21: F401 [*] `pathlib.Path` imported but unused tardis/io/model/readers/tests/test_cmfgen_reader.py:1:1: INP001 File `tardis/io/model/readers/tests/test_cmfgen_reader.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/model/readers/tests/test_cmfgen_reader.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/tests/test_cmfgen_reader.py:5:1: PT013 Incorrect import of `pytest`; use `import pytest` instead tardis/io/model/readers/tests/test_cmfgen_reader.py:6:30: F401 [*] `astropy.units` imported but unused tardis/io/model/readers/tests/test_csvy_reader.py:1:1: INP001 File `tardis/io/model/readers/tests/test_csvy_reader.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/model/readers/tests/test_csvy_reader.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/tests/test_csvy_reader.py:5:38: F401 [*] `jsonschema.exceptions` imported but unused tardis/io/model/readers/tests/test_csvy_reader.py:8:30: F401 [*] `astropy.units` imported but unused tardis/io/model/readers/tests/test_csvy_reader.py:48:10: B017 `pytest.raises(Exception)` should be considered evil tardis/io/model/readers/tests/test_stella_reader.py:1:1: INP001 File `tardis/io/model/readers/tests/test_stella_reader.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/io/model/readers/tests/test_stella_reader.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/model/readers/tests/test_stella_reader.py:5:1: PT013 Incorrect import of `pytest`; use `import pytest` instead tardis/io/tests/test_HDFWriter.py:1:1: N999 Invalid module name: 'test_HDFWriter' tardis/io/tests/test_HDFWriter.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/tests/test_HDFWriter.py:6:27: F401 [*] `numpy.testing.assert_almost_equal` imported but unused tardis/io/tests/test_atomic.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/tests/test_decay.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/io/tests/test_model_reader.py:1:8: F401 [*] `h5py` imported but unused tardis/io/util.py:18:20: N812 Lowercase `__path__` imported as non-lowercase `TARDIS_PATH` tardis/io/util.py:62:24: UP004 [*] Class `MockRegexPattern` inherits from `object` tardis/io/util.py:163:34: F821 Undefined name `basestring` tardis/io/util.py:191:22: UP004 [*] Class `HDFWriterMixin` inherits from `object` tardis/io/util.py:193:25: UP008 Use `super()` instead of `super(__class__, self)` tardis/io/util.py:239:9: RET506 Unnecessary `else` after `raise` statement tardis/io/util.py:328:21: G004 Logging statement uses f-string tardis/io/util.py:385:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/io/util.py:392:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/io/util.py:415:13: G004 Logging statement uses f-string tardis/model/__init__.py:2:44: W291 Trailing whitespace tardis/model/__init__.py:4:53: W291 Trailing whitespace tardis/model/__init__.py:5:46: W291 Trailing whitespace tardis/model/__init__.py:9:31: F401 `tardis.model.base.SimulationState` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/model/base.py:339:12: PTH117 `os.path.isabs()` should be replaced by `Path.is_absolute()` tardis/model/base.py:352:27: C403 Unnecessary `list` comprehension (rewrite as a `set` comprehension) tardis/model/base.py:365:27: C403 Unnecessary `list` comprehension (rewrite as a `set` comprehension) tardis/model/base.py:376:21: G004 Logging statement uses f-string tardis/model/geometry/radial1d.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/model/geometry/radial1d.py:196:29: UP004 [*] Class `NumbaRadial1DGeometry` inherits from `object` tardis/model/geometry/tests/test_radial1d.py:1:1: INP001 File `tardis/model/geometry/tests/test_radial1d.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/model/geometry/tests/test_radial1d.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/model/matter/__init__.py:1:45: F401 `tardis.model.matter.composition.Composition` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/model/matter/composition.py:206:9: RET505 Unnecessary `else` after `return` statement tardis/model/matter/decay.py:20:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/model/matter/decay.py:28:28: C408 Unnecessary `dict` call (rewrite as a literal) tardis/model/matter/decay.py:36:30: C405 Unnecessary `list` literal (rewrite as a `set` literal) tardis/model/matter/decay.py:71:23: C408 Unnecessary `dict` call (rewrite as a literal) tardis/model/matter/decay.py:101:21: G004 Logging statement uses f-string tardis/model/matter/decay.py:104:17: G004 Logging statement uses f-string tardis/model/tests/test_base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/model/tests/test_base.py:1:8: F401 [*] `os` imported but unused tardis/model/tests/test_base.py:2:21: F401 [*] `pathlib.Path` imported but unused tardis/model/tests/test_csvy_model.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/model/tests/test_csvy_model.py:1:21: F401 [*] `pathlib.Path` imported but unused tardis/model/tests/test_csvy_model.py:6:30: F401 [*] `astropy.units` imported but unused tardis/model/tests/test_csvy_model.py:8:38: F401 [*] `tardis.io.atom_data.base.AtomData` imported but unused tardis/model/tests/test_density.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/model/tests/test_density.py:1:8: F401 [*] `os` imported but unused tardis/opacities/macro_atom/base.py:22:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/opacities/macro_atom/base.py:133:9: E722 Do not use bare `except` tardis/opacities/macro_atom/util.py:4:33: F401 [*] `tardis.constants` imported but unused tardis/opacities/opacity_state.py:109:9: ANN204 Missing return type annotation for special method `__getitem__` tardis/opacities/opacity_state.py:115:9: D407 [*] Missing dashed underline after section ("Returns") tardis/opacities/opacity_state.py:115:9: D406 [*] Section name should end with a newline ("Returns") tardis/opacities/tau_sobolev.py:92:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/__init__.py:2:63: W291 Trailing whitespace tardis/plasma/__init__.py:5:32: F401 `tardis.plasma.base.BasePlasma` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/plasma/base.py:11:1: F403 `from tardis.plasma.properties.base import *` used; unable to detect undefined names tardis/plasma/base.py:45:9: RET505 Unnecessary `else` after `return` statement tardis/plasma/base.py:46:18: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/base.py:53:9: RET506 Unnecessary `else` after `raise` statement tardis/plasma/base.py:54:18: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/base.py:111:17: E722 Do not use bare `except` tardis/plasma/base.py:144:44: F405 `PreviousIterationProperty` may be undefined, or defined from star imports tardis/plasma/base.py:153:46: F405 `Input` may be undefined, or defined from star imports tardis/plasma/base.py:273:13: G004 Logging statement uses f-string tardis/plasma/base.py:296:20: F401 [*] `pygraphviz` imported but unused tardis/plasma/base.py:297:9: E722 Do not use bare `except` tardis/plasma/base.py:306:16: E712 Avoid equality comparisons to `True`; use `if latex_label:` for truth checks tardis/plasma/base.py:327:16: E712 Avoid equality comparisons to `True`; use `if latex_label:` for truth checks tardis/plasma/base.py:333:16: E712 Avoid equality comparisons to `True`; use `if latex_label:` for truth checks tardis/plasma/base.py:383:9: E722 Do not use bare `except` tardis/plasma/base.py:429:35: F405 `HiddenPlasmaProperty` may be undefined, or defined from star imports tardis/plasma/base.py:447:29: E722 Do not use bare `except` tardis/plasma/properties/__init__.py:8:1: F403 `from tardis.opacities.macro_atom.transition_probabilities import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:9:1: F403 `from tardis.plasma.properties.atomic import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:10:1: F403 `from tardis.plasma.properties.continuum_processes import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:11:1: F403 `from tardis.plasma.properties.general import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:12:1: F403 `from tardis.plasma.properties.helium_nlte import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:13:1: F403 `from tardis.plasma.properties.ion_population import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:14:1: F403 `from tardis.plasma.properties.level_population import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:15:1: F403 `from tardis.plasma.properties.nlte import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:16:1: F403 `from tardis.plasma.properties.nlte_rate_equation_solver import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:17:1: F403 `from tardis.plasma.properties.partition_function import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:18:1: F403 `from tardis.plasma.properties.plasma_input import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:19:1: F403 `from tardis.plasma.properties.radiative_properties import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:20:1: F403 `from tardis.plasma.properties.rate_matrix_index import *` used; unable to detect undefined names tardis/plasma/properties/atomic.py:6:28: F401 [*] `radioactivedecay` imported but unused tardis/plasma/properties/atomic.py:11:33: F401 [*] `tardis.constants` imported but unused tardis/plasma/properties/atomic.py:379:17: UP032 [*] Use f-string instead of `format` call tardis/plasma/properties/atomic.py:558:9: RET505 Unnecessary `else` after `return` statement tardis/plasma/properties/atomic.py:589:9: RET505 Unnecessary `else` after `return` statement tardis/plasma/properties/atomic.py:602:17: G004 Logging statement uses f-string tardis/plasma/properties/atomic.py:643:9: RET505 Unnecessary `else` after `return` statement tardis/plasma/properties/base.py:78:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/base.py:117:25: G004 Logging statement uses f-string tardis/plasma/properties/base.py:135:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/base.py:163:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/base.py:178:9: RET505 Unnecessary `else` after `return` statement tardis/plasma/properties/continuum_processes/__init__.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/plasma/properties/continuum_processes/__init__.py:2:5: F401 `tardis.plasma.properties.continuum_processes.photo_ion_rate_coeff.PhotoIonRateCoeff` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/plasma/properties/continuum_processes/__init__.py:4:1: F403 `from tardis.plasma.properties.continuum_processes.rates import *` used; unable to detect undefined names tardis/plasma/properties/continuum_processes/__init__.py:6:5: F401 `tardis.plasma.properties.continuum_processes.recomb_rate_coeff.StimRecombRateFactor` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/plasma/properties/continuum_processes/__init__.py:7:5: F401 `tardis.plasma.properties.continuum_processes.recomb_rate_coeff.SpontRecombRateCoeff` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/plasma/properties/continuum_processes/__init__.py:8:5: F401 `tardis.plasma.properties.continuum_processes.recomb_rate_coeff.StimRecombRateCoeff` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/plasma/properties/continuum_processes/fast_array_util.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/plasma/properties/general.py:4:30: F401 [*] `astropy.units` imported but unused tardis/plasma/properties/general.py:33:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/general.py:74:21: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/general.py:118:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/helium_nlte.py:51:13: UP034 [*] Avoid extraneous parentheses tardis/plasma/properties/helium_nlte.py:126:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/helium_nlte.py:178:21: E722 Do not use bare `except` tardis/plasma/properties/helium_nlte.py:181:29: G004 Logging statement uses f-string tardis/plasma/properties/helium_nlte.py:214:23: S605 Starting a process with a shell: seems safe, but may be changed in the future; consider rewriting without `shell` tardis/plasma/properties/helium_nlte.py:231:18: UP015 [*] Unnecessary open mode parameters tardis/plasma/properties/helium_nlte.py:234:36: PIE808 [*] Unnecessary `start` argument in `range` tardis/plasma/properties/helium_nlte.py:257:69: F821 Undefined name `s1` tardis/plasma/properties/ion_population.py:206:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/ion_population.py:289:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/ion_population.py:368:25: G004 Logging statement uses f-string tardis/plasma/properties/ion_population.py:422:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/ion_population.py:489:25: G004 Logging statement uses f-string tardis/plasma/properties/level_population.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/plasma/properties/level_population.py:28:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/nlte.py:2:8: F401 [*] `os` imported but unused tardis/plasma/properties/nlte.py:4:17: F401 [*] `numpy` imported but unused tardis/plasma/properties/nlte.py:10:53: F401 [*] `tardis.plasma.properties.ion_population.PhiSahaNebular` imported but unused tardis/plasma/properties/nlte_excitation_data.py:8:26: UP004 [*] Class `NLTEExcitationData` inherits from `object` tardis/plasma/properties/nlte_rate_equation_solver.py:302:25: UP032 [*] Use f-string instead of `format` call tardis/plasma/properties/nlte_rate_equation_solver.py:302:25: G001 Logging statement uses `str.format` tardis/plasma/properties/nlte_rate_equation_solver.py:311:25: G004 Logging statement uses f-string tardis/plasma/properties/partition_function.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/plasma/properties/partition_function.py:145:9: RET505 Unnecessary `elif` after `return` statement tardis/plasma/properties/partition_function.py:161:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/partition_function.py:181:25: G004 Logging statement uses f-string tardis/plasma/properties/partition_function.py:192:21: G004 Logging statement uses f-string tardis/plasma/properties/partition_function.py:199:21: G004 Logging statement uses f-string tardis/plasma/properties/partition_function.py:252:21: RET506 Unnecessary `else` after `raise` statement tardis/plasma/properties/partition_function.py:395:21: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/plasma_input.py:2:5: F401 [*] `tardis.plasma.properties.base.ArrayInput` imported but unused tardis/plasma/properties/property_collections.py:10:1: F403 `from tardis.plasma.properties import *` used; unable to detect undefined names tardis/plasma/properties/property_collections.py:19:9: F405 `DilutePlanckianRadField` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:20:9: F405 `Abundance` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:21:9: F405 `NumberDensity` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:22:9: F405 `TimeExplosion` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:23:9: F405 `AtomicData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:24:9: F405 `JBlues` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:25:9: F405 `LinkTRadTElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:26:9: F405 `HeliumTreatment` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:27:9: F405 `ContinuumInteractionSpecies` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:28:9: F405 `NLTEIonizationSpecies` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:29:9: F405 `NLTEExcitationSpecies` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:34:9: F405 `TRadiative` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:35:9: F405 `DilutionFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:36:9: F405 `BetaRadiation` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:37:9: F405 `Levels` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:38:9: F405 `Lines` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:39:9: F405 `PartitionFunction` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:40:9: F405 `GElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:41:9: F405 `IonizationData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:42:9: F405 `LinesLowerLevelIndex` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:43:9: F405 `LinesUpperLevelIndex` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:45:9: F405 `StimulatedEmissionFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:46:9: F405 `SelectedAtoms` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:47:9: F405 `ElectronTemperature` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:50:55: F405 `PhiSahaLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:51:55: F405 `LevelBoltzmannFactorLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:53:6: F405 `BetaSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:53:44: F405 `MacroAtomData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:56:6: F405 `PhiSahaNebular` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:56:22: F405 `ZetaData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:56:32: F405 `BetaElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:56:46: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:59:6: F405 `LevelBoltzmannFactorDiluteLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:61:49: F405 `LevelBoltzmannFactorNoNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:64:9: F405 `LevelBoltzmannFactorNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:65:9: F405 `NLTEData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:66:9: F405 `PreviousElectronDensities` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:67:9: F405 `PreviousBetaSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:68:9: F405 `BetaSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:72:6: F405 `NLTEIndexHelper` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:72:23: F405 `NLTEPopulationSolverRoot` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:75:6: F405 `NLTEIndexHelper` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:75:23: F405 `NLTEPopulationSolverLU` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:79:9: F405 `HeliumNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:80:9: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:81:9: F405 `ZetaData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:82:9: F405 `BetaElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:83:9: F405 `LevelNumberDensityHeNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:84:9: F405 `IonNumberDensityHeNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:88:6: F405 `LevelNumberDensity` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:88:26: F405 `IonNumberDensity` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:91:6: F405 `HeliumNumericalNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:95:9: F405 `PhotoIonRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:96:9: F405 `StimRecombRateFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:97:9: F405 `BfHeatingRateCoeffEstimator` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:98:9: F405 `StimRecombCoolingRateCoeffEstimator` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:99:9: F405 `YgData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:104:9: F405 `StimRecombRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:105:9: F405 `PhotoIonizationData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:106:9: F405 `SpontRecombRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:107:9: F405 `ThermalLevelBoltzmannFactorLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:108:9: F405 `ThermalLTEPartitionFunction` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:109:9: F405 `BetaElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:110:9: F405 `ThermalGElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:111:9: F405 `ThermalPhiSahaLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:112:9: F405 `SahaFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:113:9: F405 `CorrPhotoIonRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:114:9: F405 `SpontRecombCoolingRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:115:9: F405 `RawRecombTransProbs` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:116:9: F405 `RawPhotoIonTransProbs` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:117:9: F405 `RawRadBoundBoundTransProbs` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:118:9: F405 `MarkovChainTransProbs` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:119:9: F405 `NonContinuumTransProbsMask` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:120:9: F405 `YgInterpolator` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:121:9: F405 `CollExcRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:122:9: F405 `CollDeexcRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:123:9: F405 `RawCollisionTransProbs` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:124:9: F405 `MarkovChainIndex` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:125:9: F405 `MarkovChainTransProbsCollector` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:127:9: F405 `MonteCarloTransProbs` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:128:9: F405 `FreeFreeCoolingRate` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:129:9: F405 `FreeBoundCoolingRate` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:131:9: F405 `LevelNumberDensityLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:132:9: F405 `PhotoIonBoltzmannFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:133:9: F405 `FreeBoundEmissionCDF` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:134:9: F405 `LevelIdxs2LineIdx` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:135:9: F405 `LevelIdxs2TransitionIdx` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:136:9: F405 `CollIonRateCoeffSeaton` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:137:9: F405 `CollRecombRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:139:9: F405 `ContinuumInteractionHandler` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:140:9: F405 `BetaSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:143:58: F405 `AdiabaticCoolingRate` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:146:9: F405 `RawTwoPhotonTransProbs` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:147:9: F405 `TwoPhotonData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:148:9: F405 `TwoPhotonEmissionCDF` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:149:9: F405 `TwoPhotonFrequencySampler` may be undefined, or defined from star imports tardis/plasma/properties/radiative_properties.py:40:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/radiative_properties.py:176:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/plasma/properties/rate_matrix_index.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/plasma/radiation_field/__init__.py:2:5: F401 `tardis.plasma.radiation_field.planck_rad_field.DilutePlanckianRadiationField` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/plasma/radiation_field/planck_rad_field.py:58:44: FA100 Add `from __future__ import annotations` to simplify `typing.Union` tardis/plasma/radiation_field/planck_rad_field.py:117:44: FA100 Add `from __future__ import annotations` to simplify `typing.Union` tardis/plasma/standard_plasmas.py:316:9: RET506 Unnecessary `else` after `raise` statement tardis/plasma/tests/test_complete_plasmas.py:147:27: FLY002 Consider `f"{hash_string}_{prop}"` instead of string join tardis/plasma/tests/test_complete_plasmas.py:152:39: FLY002 Consider `f"{hash_string}_{nlte_prop}"` instead of string join tardis/plasma/tests/test_hdf_plasma.py:1:17: F401 [*] `numpy` imported but unused tardis/plasma/tests/test_nlte_excitation.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/plasma/tests/test_nlte_excitation.py:5:27: F401 [*] `numpy.testing.assert_allclose` imported but unused tardis/plasma/tests/test_nlte_solver.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/plasma/tests/test_nlte_solver.py:5:25: F811 [*] Redefinition of unused `npt` from line 2 tardis/plasma/tests/test_plasma_continuum.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/radiation_field/base.py:1:1: INP001 File `tardis/radiation_field/base.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/radiation_field/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/scripts/cmfgen2tardis.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/scripts/cmfgen2tardis.py:2:8: F401 [*] `sys` imported but unused tardis/scripts/cmfgen2tardis.py:7:33: F401 [*] `tardis.io.atom_data.AtomData` imported but unused tardis/scripts/cmfgen2tardis.py:15:27: F821 Undefined name `atomic_dataset` tardis/scripts/cmfgen2tardis.py:43:10: UP015 [*] Unnecessary open mode parameters tardis/scripts/cmfgen2tardis.py:70:34: F821 Undefined name `atomic_dataset` tardis/scripts/cmfgen2tardis.py:105:18: FLY002 Consider `f"{filename}.csv"` instead of string join tardis/scripts/debug/run_numba_single.py:1:1: INP001 File `tardis/scripts/debug/run_numba_single.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/simulation/__init__.py:5:36: F401 `tardis.simulation.base.Simulation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/simulation/base.py:145:14: UP008 Use `super()` instead of `super(__class__, self)` tardis/simulation/base.py:187:13: RET506 Unnecessary `else` after `raise` statement tardis/simulation/base.py:251:17: G004 Logging statement uses f-string tardis/simulation/base.py:258:9: RET505 Unnecessary `else` after `return` statement tardis/simulation/base.py:439:13: G004 Logging statement uses f-string tardis/simulation/base.py:521:13: G004 Logging statement uses f-string tardis/simulation/base.py:622:25: G004 Logging statement uses f-string tardis/simulation/base.py:625:13: G004 Logging statement uses f-string tardis/simulation/base.py:630:13: G004 Logging statement uses f-string tardis/simulation/base.py:681:13: TRY300 Consider moving this statement to an `else` block tardis/simulation/base.py:683:26: G004 Logging statement uses f-string tardis/simulation/tests/test_simulation.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/simulation/tests/test_simulation.py:1:8: F401 [*] `os` imported but unused tardis/simulation/tests/test_simulation.py:6:8: F401 [*] `logging` imported but unused tardis/simulation/tests/test_simulation.py:10:20: F401 [*] `tardis.run_tardis` imported but unused tardis/simulation/tests/test_simulation.py:50:5: RET505 Unnecessary `else` after `return` statement tardis/spectrum/formal_integral.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/spectrum/formal_integral.py:9:25: F401 [*] `numba.char` imported but unused tardis/spectrum/formal_integral.py:9:31: F401 [*] `numba.float64` imported but unused tardis/spectrum/formal_integral.py:9:40: F401 [*] `numba.int64` imported but unused tardis/spectrum/formal_integral.py:9:47: F401 [*] `numba.typeof` imported but unused tardis/spectrum/formal_integral.py:9:55: F401 [*] `numba.byte` imported but unused tardis/spectrum/formal_integral.py:10:32: F401 [*] `numba.experimental.jitclass` imported but unused tardis/spectrum/formal_integral.py:21:5: F811 Redefinition of unused `opacity_state_initialize` from line 15 tardis/spectrum/formal_integral.py:22:5: F811 Redefinition of unused `OpacityState` from line 14 tardis/spectrum/formal_integral.py:22:5: F401 [*] `tardis.transport.montecarlo.numba_interface.OpacityState` imported but unused tardis/spectrum/formal_integral.py:55:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/spectrum/formal_integral.py:65:7: TD006 [*] Invalid TODO capitalization: `todo` should be `TODO` tardis/spectrum/formal_integral.py:218:29: UP004 [*] Class `NumbaFormalIntegrator` inherits from `object` tardis/spectrum/formal_integral.py:261:24: UP004 [*] Class `FormalIntegrator` inherits from `object` tardis/spectrum/formal_integral.py:299:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/spectrum/formal_integral.py:344:13: RET506 Unnecessary `else` after `raise` statement tardis/spectrum/formal_integral.py:356:16: E713 [*] Test for membership should be `not in` tardis/spectrum/formal_integral.py:615:9: D209 [*] Multi-line docstring closing quotes should be on a separate line tardis/spectrum/formal_integral.py:684:5: RET505 Unnecessary `else` after `return` statement tardis/spectrum/formal_integral.py:720:5: RET505 Unnecessary `else` after `return` statement tardis/spectrum/formal_integral_cuda.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/spectrum/formal_integral_cuda.py:1:8: F401 [*] `sys` imported but unused tardis/spectrum/formal_integral_cuda.py:3:30: F401 [*] `astropy.units` imported but unused tardis/spectrum/formal_integral_cuda.py:4:19: F401 [*] `numba.float64` imported but unused tardis/spectrum/formal_integral_cuda.py:4:28: F401 [*] `numba.int64` imported but unused tardis/spectrum/formal_integral_cuda.py:17:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/spectrum/formal_integral_cuda.py:58:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/spectrum/formal_integral_cuda.py:237:28: UP004 [*] Class `CudaFormalIntegrator` inherits from `object` tardis/spectrum/formal_integral_cuda.py:378:5: RET505 Unnecessary `else` after `return` statement tardis/spectrum/formal_integral_cuda.py:423:5: RET505 Unnecessary `else` after `return` statement tardis/spectrum/formal_integral_cuda.py:433:5: PIE790 [*] Unnecessary `pass` statement tardis/spectrum/formal_integral_cuda.py:513:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/spectrum/formal_integral_cuda.py:555:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/spectrum/tests/test_cuda_formal_integral.py:1:1: INP001 File `tardis/spectrum/tests/test_cuda_formal_integral.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/spectrum/tests/test_cuda_formal_integral.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/spectrum/tests/test_cuda_formal_integral.py:15:46: F401 [*] `tardis.transport.montecarlo.base.MonteCarloTransportSolver` imported but unused tardis/spectrum/tests/test_numba_formal_integral.py:1:1: INP001 File `tardis/spectrum/tests/test_numba_formal_integral.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/spectrum/tests/test_numba_formal_integral.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/spectrum/tests/test_numba_formal_integral.py:5:18: F401 [*] `copy.deepcopy` imported but unused tardis/spectrum/tests/test_spectrum.py:1:1: INP001 File `tardis/spectrum/tests/test_spectrum.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/spectrum/tests/test_spectrum.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/spectrum/tests/test_spectrum_solver.py:1:1: INP001 File `tardis/spectrum/tests/test_spectrum_solver.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/tests/fixtures/atom_data.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/tests/fixtures/atom_data.py:2:21: F401 [*] `pathlib.Path` imported but unused tardis/tests/integration_tests/conftest.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/tests/integration_tests/conftest.py:42:13: F821 Undefined name `tardis_githash` tardis/tests/integration_tests/conftest.py:87:5: RET505 Unnecessary `else` after `return` statement tardis/tests/integration_tests/conftest.py:90:16: UP024 [*] Replace aliased errors with `OSError` tardis/tests/integration_tests/conftest.py:91:19: UP024 [*] Replace aliased errors with `OSError` tardis/tests/integration_tests/test_integration.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/tests/integration_tests/test_integration.py:5:8: ICN001 `matplotlib` should be imported as `mpl` tardis/tests/integration_tests/test_integration.py:8:1: I001 [*] Import block is un-sorted or un-formatted tardis/tests/integration_tests/test_integration.py:74:23: UP004 [*] Class `TestIntegration` inherits from `object` tardis/tests/test_tardis_full_formal_integral.py:61:9: RET505 Unnecessary `else` after `return` statement tardis/tests/test_util.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/tests/test_util.py:3:25: F401 [*] `numpy.testing` imported but unused tardis/tests/test_util.py:15:5: F401 [*] `tardis.util.base.create_synpp_yaml` imported but unused tardis/transport/frame_transformations.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/frame_transformations.py:19:5: RET505 Unnecessary `else` after `return` statement tardis/transport/frame_transformations.py:49:5: RET505 Unnecessary `else` after `return` statement tardis/transport/geometry/calculate_distances.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/geometry/calculate_distances.py:18:5: F401 [*] `tardis.transport.montecarlo.r_packet.print_r_packet_properties` imported but unused tardis/transport/geometry/calculate_distances.py:24:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/transport/geometry/calculate_distances.py:73:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/transport/montecarlo/__init__.py:2:39: W291 Trailing whitespace tardis/transport/montecarlo/__init__.py:6:69: W291 Trailing whitespace tardis/transport/montecarlo/__init__.py:14:1: E402 Module level import not at top of file tardis/transport/montecarlo/__init__.py:24:1: E402 Module level import not at top of file tardis/transport/montecarlo/__init__.py:24:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/__init__.py:24:50: F401 `tardis.transport.montecarlo.r_packet.RPacket` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/transport/montecarlo/__init__.py:25:1: E402 Module level import not at top of file tardis/transport/montecarlo/__init__.py:26:5: F401 `tardis.transport.montecarlo.packet_collections.PacketCollection` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/transport/montecarlo/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/configuration/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/configuration/base.py:7:41: F401 [*] `tardis.transport.montecarlo.montecarlo_main_loop` imported but unused tardis/transport/montecarlo/configuration/base.py:32:31: UP004 [*] Class `MonteCarloConfiguration` inherits from `object` tardis/transport/montecarlo/estimators/__init__.py:2:5: F401 `tardis.transport.montecarlo.estimators.base.EstimatedRadiationFieldProperties` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/transport/montecarlo/estimators/radfield_estimator_calcs.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py:1:1: INP001 File `tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py:3:25: F401 [*] `numpy.testing` imported but unused tardis/transport/montecarlo/interaction.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/macro_atom.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/macro_atom.py:5:41: F401 [*] `tardis.transport.montecarlo.njit_dict` imported but unused tardis/transport/montecarlo/nonhomologous_grid.py:20:5: D409 [*] Section underline should match the length of its name ("Returns") tardis/transport/montecarlo/nonhomologous_grid.py:36:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/transport/montecarlo/nonhomologous_grid.py:40:5: D411 [*] Missing blank line before section ("Parameters") tardis/transport/montecarlo/nonhomologous_grid.py:46:5: D409 [*] Section underline should match the length of its name ("Returns") tardis/transport/montecarlo/nonhomologous_grid.py:64:5: D409 [*] Section underline should match the length of its name ("Parameters") tardis/transport/montecarlo/nonhomologous_grid.py:67:5: D411 [*] Missing blank line before section ("Returns") tardis/transport/montecarlo/nonhomologous_grid.py:68:5: D409 [*] Section underline should match the length of its name ("Returns") tardis/transport/montecarlo/numba_interface.py:40:20: UP004 [*] Class `OpacityState` inherits from `object` tardis/transport/montecarlo/numba_interface.py:66:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/transport/montecarlo/numba_interface.py:115:9: ANN204 Missing return type annotation for special method `__getitem__` tardis/transport/montecarlo/numba_interface.py:121:9: D407 [*] Missing dashed underline after section ("Returns") tardis/transport/montecarlo/numba_interface.py:121:9: D406 [*] Section name should end with a newline ("Returns") tardis/transport/montecarlo/numba_interface.py:156:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/transport/montecarlo/packet_source.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/packet_source.py:228:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/transport/montecarlo/packet_source.py:246:9: RET505 Unnecessary `else` after `return` statement tardis/transport/montecarlo/packet_source.py:270:9: D412 [*] No blank lines allowed between a section header and its content ("Parameters") tardis/transport/montecarlo/packet_trackers.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/packet_trackers.py:24:22: UP004 [*] Class `RPacketTracker` inherits from `object` tardis/transport/montecarlo/packet_trackers.py:27:5: D411 [*] Missing blank line before section ("Parameters") tardis/transport/montecarlo/packet_trackers.py:149:48: B009 [*] Do not call `getattr` with a constant attribute value. It is not any safer than normal property access. tardis/transport/montecarlo/packet_trackers.py:169:37: UP004 [*] Class `RPacketLastInteractionTracker` inherits from `object` tardis/transport/montecarlo/packet_trackers.py:172:5: D411 [*] Missing blank line before section ("Parameters") tardis/transport/montecarlo/r_packet.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/r_packet.py:4:18: F401 [*] `pandas` imported but unused tardis/transport/montecarlo/r_packet.py:14:41: F811 [*] Redefinition of unused `njit_dict_no_parallel` from line 9 tardis/transport/montecarlo/r_packet.py:51:15: UP004 [*] Class `RPacket` inherits from `object` tardis/transport/montecarlo/r_packet_transport.py:115:13: RET508 Unnecessary `elif` after `break` statement tardis/transport/montecarlo/single_packet_loop.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/conftest.py:14:5: F811 Redefinition of unused `opacity_state_initialize` from line 7 tardis/transport/montecarlo/tests/test_base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_base.py:1:8: F401 [*] `os` imported but unused tardis/transport/montecarlo/tests/test_base.py:3:17: F401 [*] `numpy` imported but unused tardis/transport/montecarlo/tests/test_base.py:5:30: F401 [*] `astropy.units` imported but unused tardis/transport/montecarlo/tests/test_base.py:7:21: F401 [*] `pathlib.Path` imported but unused tardis/transport/montecarlo/tests/test_interaction.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_macro_atom.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_macro_atom.py:3:17: F401 [*] `numpy` imported but unused tardis/transport/montecarlo/tests/test_montecarlo.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_montecarlo.py:27:1: E402 Module level import not at top of file tardis/transport/montecarlo/tests/test_montecarlo.py:32:1: E402 Module level import not at top of file tardis/transport/montecarlo/tests/test_montecarlo.py:48:5: PT021 Use `yield` instead of `request.addfinalizer` tardis/transport/montecarlo/tests/test_montecarlo.py:204:5: F811 Redefinition of unused `test_get_random_mu_different_output` from line 195 tardis/transport/montecarlo/tests/test_montecarlo.py:484:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:570:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:571:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:579:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:592:9: PT014 Duplicate of test case at index 1 in `@pytest_mark.parametrize` tardis/transport/montecarlo/tests/test_montecarlo.py:597:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:602:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:625:9: F821 Undefined name `transport` tardis/transport/montecarlo/tests/test_montecarlo.py:626:9: F821 Undefined name `transport` tardis/transport/montecarlo/tests/test_montecarlo.py:627:9: F821 Undefined name `transport` tardis/transport/montecarlo/tests/test_montecarlo.py:628:9: F821 Undefined name `transport` tardis/transport/montecarlo/tests/test_montecarlo.py:630:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:643:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:667:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo.py:680:5: F821 Undefined name `mc` tardis/transport/montecarlo/tests/test_montecarlo_main_loop.py:11:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/transport/montecarlo/tests/test_montecarlo_main_loop.py:11:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/transport/montecarlo/tests/test_numba_interface.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_numba_interface.py:80:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/transport/montecarlo/tests/test_numba_interface.py:80:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/transport/montecarlo/tests/test_opacities.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_packet.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_packet.py:8:38: F811 [*] Redefinition of unused `opacities` from line 4 tardis/transport/montecarlo/tests/test_packet.py:9:50: F811 [*] Redefinition of unused `frame_transformations` from line 5 tardis/transport/montecarlo/tests/test_packet.py:10:57: F811 [*] Redefinition of unused `calculate_distances` from line 6 tardis/transport/montecarlo/tests/test_packet.py:12:55: F401 [*] `tardis.transport.montecarlo.numba_interface` imported but unused tardis/transport/montecarlo/tests/test_packet.py:15:50: F811 [*] Redefinition of unused `frame_transformations` from line 9 tardis/transport/montecarlo/tests/test_packet.py:16:57: F811 [*] Redefinition of unused `calculate_distances` from line 10 tardis/transport/montecarlo/tests/test_packet.py:27:1: E402 Module level import not at top of file tardis/transport/montecarlo/tests/test_packet_source.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_packet_source.py:1:8: F401 [*] `os` imported but unused tardis/transport/montecarlo/tests/test_packet_source.py:5:18: F401 [*] `pandas` imported but unused tardis/transport/montecarlo/tests/test_packet_source.py:13:51: F401 [*] `tardis.tests.fixtures.regression_data.RegressionData` imported but unused tardis/transport/montecarlo/tests/test_rpacket_last_interaction_tracker.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_rpacket_tracker.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_single_packet_loop.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_single_packet_loop.py:52:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/transport/montecarlo/tests/test_single_packet_loop.py:52:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/transport/montecarlo/tests/test_single_packet_loop.py:57:5: PT015 Assertion always fails, replace with `pytest.fail()` tardis/transport/montecarlo/tests/test_single_packet_loop.py:57:12: B011 Do not `assert False` (`python -O` removes these calls), raise `AssertionError()` tardis/transport/montecarlo/tests/test_tracker_utils.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_tracker_utils.py:1:8: F401 [*] `pytest` imported but unused tardis/transport/montecarlo/tests/test_vpacket.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_vpacket.py:1:8: F401 [*] `os` imported but unused tardis/transport/montecarlo/tests/test_vpacket.py:4:18: F401 [*] `pandas` imported but unused tardis/transport/montecarlo/tests/test_vpacket.py:14:1: E402 Module level import not at top of file tardis/transport/montecarlo/tests/test_weighted_packet_source.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/tests/test_weighted_packet_source.py:1:8: F401 [*] `os` imported but unused tardis/transport/montecarlo/tests/test_weighted_packet_source.py:4:17: F401 [*] `numpy` imported but unused tardis/transport/montecarlo/tests/test_weighted_packet_source.py:5:18: F401 [*] `pandas` imported but unused tardis/transport/montecarlo/tests/test_weighted_packet_source.py:12:51: F401 [*] `tardis.tests.fixtures.regression_data.RegressionData` imported but unused tardis/transport/montecarlo/utils.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/weighted_packet_source.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/montecarlo/weighted_packet_source.py:1:19: F401 [*] `numexpr` imported but unused tardis/transport/montecarlo/weighted_packet_source.py:2:17: F401 [*] `numpy` imported but unused tardis/transport/montecarlo/weighted_packet_source.py:3:34: F401 [*] `astropy.constants` imported but unused tardis/transport/montecarlo/weighted_packet_source.py:7:5: F401 [*] `tardis.transport.montecarlo.packet_source.BasePacketSource` imported but unused tardis/transport/montecarlo/weighted_packet_source.py:8:5: F401 [*] `tardis.transport.montecarlo.packet_source.HDFWriterMixin` imported but unused tardis/transport/montecarlo/weighted_packet_source.py:84:13: B018 Found useless expression. Either assign it to a variable or remove it. tardis/transport/tests/test_doppler_factor.py:1:1: INP001 File `tardis/transport/tests/test_doppler_factor.py` is part of an implicit namespace package. Add an `__init__.py`. tardis/transport/tests/test_doppler_factor.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/transport/tests/test_doppler_factor.py:2:17: F401 [*] `numpy` imported but unused tardis/transport/tests/test_doppler_factor.py:5:48: F401 [*] `tardis.transport.montecarlo.r_packet` imported but unused tardis/util/base.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/util/base.py:12:30: F401 [*] `radioactivedecay.Nuclide` imported but unused tardis/util/base.py:119:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/util/base.py:135:12: C414 Unnecessary `list` call within `set()` tardis/util/base.py:196:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/util/base.py:234:13: PIE790 [*] Unnecessary `pass` statement tardis/util/base.py:344:5: RET505 Unnecessary `else` after `return` statement tardis/util/base.py:349:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/util/base.py:405:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/util/base.py:483:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/util/base.py:502:5: D202 [*] No blank lines allowed after function docstring (found 1) tardis/util/base.py:522:5: E722 Do not use bare `except` tardis/util/base.py:523:22: SIM210 Remove unnecessary `True if ... else False` tardis/util/base.py:630:5: RET505 Unnecessary `elif` after `return` statement tardis/util/base.py:776:5: D412 [*] No blank lines allowed between a section header and its content ("Parameters") tardis/visualization/__init__.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/__init__.py:3:57: F401 `tardis.visualization.tools.convergence_plot.ConvergencePlots` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:6:5: F401 `tardis.visualization.widgets.shell_info.shell_info_from_simulation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:7:5: F401 `tardis.visualization.widgets.shell_info.shell_info_from_hdf` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:9:52: F401 `tardis.visualization.widgets.line_info.LineInfoWidget` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:10:51: F401 `tardis.visualization.widgets.grotrian.GrotrianWidget` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:11:59: F401 `tardis.visualization.widgets.custom_abundance.CustomAbundanceWidget` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:12:50: F401 `tardis.visualization.tools.sdec_plot.SDECPlotter` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:13:53: F401 `tardis.visualization.tools.rpacket_plot.RPacketPlotter` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/__init__.py:14:49: F401 `tardis.visualization.tools.liv_plot.LIVPlotter` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/visualization/plot_util.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/plot_util.py:42:5: RET505 Unnecessary `else` after `return` statement tardis/visualization/tools/convergence_plot.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/tools/convergence_plot.py:4:25: F401 [*] `matplotlib.cm` imported but unused tardis/visualization/tools/convergence_plot.py:5:29: F401 [*] `matplotlib.colors` imported but unused tardis/visualization/tools/convergence_plot.py:39:24: UP004 [*] Class `ConvergencePlots` inherits from `object` tardis/visualization/tools/convergence_plot.py:321:13: ISC003 Explicitly concatenated string should be implicitly concatenated tardis/visualization/tools/liv_plot.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/tools/liv_plot.py:25:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/visualization/tools/liv_plot.py:48:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/visualization/tools/liv_plot.py:312:13: RET506 Unnecessary `elif` after `raise` statement tardis/visualization/tools/liv_plot.py:313:24: G010 [*] Logging statement uses `warn` instead of `warning` tardis/visualization/tools/rpacket_plot.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/tools/rpacket_plot.py:3:18: F401 [*] `pandas` imported but unused tardis/visualization/tools/rpacket_plot.py:6:26: F401 [*] `plotly.express` imported but unused tardis/visualization/tools/rpacket_plot.py:101:13: RET505 Unnecessary `else` after `return` statement tardis/visualization/tools/rpacket_plot.py:110:114: W291 Trailing whitespace tardis/visualization/tools/rpacket_plot.py:115:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/visualization/tools/rpacket_plot.py:231:35: ISC003 Explicitly concatenated string should be implicitly concatenated tardis/visualization/tools/rpacket_plot.py:481:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/visualization/tools/rpacket_plot.py:615:35: ISC003 Explicitly concatenated string should be implicitly concatenated tardis/visualization/tools/rpacket_plot.py:646:9: D202 [*] No blank lines allowed after function docstring (found 1) tardis/visualization/tools/sdec_plot.py:202:9: RET505 Unnecessary `elif` after `return` statement tardis/visualization/tools/sdec_plot.py:343:13: RET505 Unnecessary `elif` after `return` statement tardis/visualization/tools/sdec_plot.py:460:9: RET505 Unnecessary `else` after `return` statement tardis/visualization/tools/sdec_plot.py:496:9: RET505 Unnecessary `elif` after `return` statement tardis/visualization/tools/sdec_plot.py:531:13: RET506 Unnecessary `else` after `raise` statement tardis/visualization/tools/sdec_plot.py:699:13: RET506 Unnecessary `else` after `raise` statement tardis/visualization/tools/tests/test_convergence_plot.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/tools/tests/test_convergence_plot.py:6:36: F401 [*] `tardis.tests.test_util.monkeysession` imported but unused tardis/visualization/tools/tests/test_convergence_plot.py:87:24: PIE808 [*] Unnecessary `start` argument in `range` tardis/visualization/tools/tests/test_convergence_plot.py:111:22: PIE808 [*] Unnecessary `start` argument in `range` tardis/visualization/tools/tests/test_convergence_plot.py:198:9: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks tardis/visualization/tools/tests/test_convergence_plot.py:215:9: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks tardis/visualization/tools/tests/test_convergence_plot.py:220:40: F811 Redefinition of unused `monkeysession` from line 6 tardis/visualization/tools/tests/test_rpacket_plot.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/tools/tests/test_sdec_plot.py:343:17: F631 Assert test is a non-empty tuple, which is always `True` tardis/visualization/tools/tests/test_sdec_plot.py:475:13: F631 Assert test is a non-empty tuple, which is always `True` tardis/visualization/tools/tests/test_sdec_plot.py:557:13: PLW0127 Self-assignment of variable `observed_spectrum` tardis/visualization/tools/tests/test_sdec_plot.py:618:13: F631 Assert test is a non-empty tuple, which is always `True` tardis/visualization/widgets/custom_abundance.py:2:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/widgets/custom_abundance.py:32:60: F811 [*] Redefinition of unused `quantity_linspace` from line 16 tardis/visualization/widgets/custom_abundance.py:604:47: UP032 [*] Use f-string instead of `format` call tardis/visualization/widgets/custom_abundance.py:737:9: SIM103 Return the condition directly tardis/visualization/widgets/custom_abundance.py:741:9: RET505 Unnecessary `else` after `return` statement tardis/visualization/widgets/custom_abundance.py:917:12: E712 Avoid equality comparisons to `True`; use `if obj.new:` for truth checks tardis/visualization/widgets/custom_abundance.py:1130:9: RET505 Unnecessary `else` after `return` statement tardis/visualization/widgets/custom_abundance.py:1421:9: RET506 Unnecessary `else` after `raise` statement tardis/visualization/widgets/custom_abundance.py:1473:27: UP031 Use format specifiers instead of percent format tardis/visualization/widgets/custom_abundance.py:1688:36: UP032 [*] Use f-string instead of `format` call tardis/visualization/widgets/custom_abundance.py:1724:9: F811 Redefinition of unused `input_d_time_0_eventhandler` from line 1713 tardis/visualization/widgets/custom_abundance.py:1754:13: F821 Undefined name `display` tardis/visualization/widgets/custom_abundance.py:1756:13: F821 Undefined name `display` tardis/visualization/widgets/custom_abundance.py:1758:13: F821 Undefined name `display` tardis/visualization/widgets/grotrian.py:6:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/widgets/grotrian.py:13:8: ICN001 `matplotlib` should be imported as `mpl` tardis/visualization/widgets/grotrian.py:608:35: ISC003 Explicitly concatenated string should be implicitly concatenated tardis/visualization/widgets/grotrian.py:753:35: ISC003 Explicitly concatenated string should be implicitly concatenated tardis/visualization/widgets/grotrian.py:923:20: C408 Unnecessary `dict` call (rewrite as a literal) tardis/visualization/widgets/grotrian.py:1157:9: B010 [*] Do not call `setattr` with a constant attribute value. It is not any safer than normal property access. tardis/visualization/widgets/grotrian.py:1158:9: B010 [*] Do not call `setattr` with a constant attribute value. It is not any safer than normal property access. tardis/visualization/widgets/grotrian.py:1176:9: RET505 Unnecessary `elif` after `return` statement tardis/visualization/widgets/line_info.py:3:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/widgets/line_info.py:3:8: F401 [*] `re` imported but unused tardis/visualization/widgets/line_info.py:8:8: F401 [*] `qgrid` imported but unused tardis/visualization/widgets/line_info.py:306:21: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks tardis/visualization/widgets/shell_info.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/widgets/shell_info.py:1:25: F401 [*] `tardis.base.run_tardis` imported but unused tardis/visualization/widgets/shell_info.py:2:51: F401 [*] `tardis.io.atom_data.atom_web_download.download_atom_data` imported but unused tardis/visualization/widgets/shell_info.py:12:17: F401 [*] `numpy` imported but unused tardis/visualization/widgets/shell_info.py:299:25: PIE808 [*] Unnecessary `start` argument in `range` tardis/visualization/widgets/tests/test_custom_abundance.py:2:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/widgets/tests/test_custom_abundance.py:4:8: F401 [*] `tardis` imported but unused tardis/visualization/widgets/tests/test_custom_abundance.py:8:36: F401 [*] `tardis.tests.test_util.monkeysession` imported but unused tardis/visualization/widgets/tests/test_custom_abundance.py:34:19: F811 Redefinition of unused `monkeysession` from line 8 tardis/visualization/widgets/tests/test_custom_abundance.py:156:20: E712 Avoid equality comparisons to `True`; use `if caw.btn_next.disabled:` for truth checks tardis/visualization/widgets/tests/test_custom_abundance.py:157:20: E712 Avoid equality comparisons to `True`; use `if caw.btn_prev.disabled:` for truth checks tardis/visualization/widgets/tests/test_custom_abundance.py:225:34: UP032 [*] Use f-string instead of `format` call tardis/visualization/widgets/tests/test_custom_abundance.py:225:50: RUF015 Prefer `next(iter(unique_v))` over single element slice tardis/visualization/widgets/tests/test_line_info.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/widgets/tests/test_line_info.py:7:36: F401 [*] `tardis.tests.test_util.monkeysession` imported but unused tardis/visualization/widgets/tests/test_line_info.py:43:20: E712 Avoid equality comparisons to `False`; use `if not species_interactions_df.all(axis=None):` for false checks tardis/visualization/widgets/tests/test_line_info.py:66:12: E712 Avoid equality comparisons to `False`; use `if not species_interactions_df.all(axis=None):` for false checks tardis/visualization/widgets/tests/test_line_info.py:89:20: E712 Avoid equality comparisons to `False`; use `if not last_line_counts_df.all(axis=None):` for false checks tardis/visualization/widgets/tests/test_line_info.py:145:66: F811 Redefinition of unused `monkeysession` from line 7 tardis/visualization/widgets/tests/test_line_info.py:289:16: E712 Avoid equality comparisons to `False`; use `if not bool(selected_species):` for false checks tardis/visualization/widgets/tests/test_line_info.py:335:12: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks tardis/visualization/widgets/tests/test_shell_info.py:1:1: I001 [*] Import block is un-sorted or un-formatted tardis/visualization/widgets/tests/test_shell_info.py:5:36: F401 [*] `tardis.tests.test_util.monkeysession` imported but unused tardis/visualization/widgets/tests/test_shell_info.py:142:50: F811 Redefinition of unused `monkeysession` from line 5 tardis/visualization/widgets/util.py:3:1: I001 [*] Import block is un-sorted or un-formatted Found 969 errors. [*] 418 fixable with the `--fix` option (129 hidden fixes can be enabled with the `--unsafe-fixes` option). ```

tardis-bot commented 3 months ago

*beep* *bop*

Hi, human.

The docs workflow has succeeded :heavy_check_mark:

Click here to see your results.

codecov[bot] commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 69.44%. Comparing base (e1aa887) to head (8f750b2).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #2759 +/- ## ========================================== - Coverage 69.98% 69.44% -0.54% ========================================== Files 196 198 +2 Lines 15008 15018 +10 ========================================== - Hits 10503 10429 -74 - Misses 4505 4589 +84 ```

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tardis-bot commented 3 months ago

*beep* *bop* Hi human, I ran benchmarks as you asked comparing master (e1aa88723a6836e8a25cc1afb24b578b1b78651f) and the latest commit (8f750b2af8878abf754940ba86790b8af118704a). Here are the logs produced by ASV. Results can also be downloaded as artifacts here.

Significantly changed benchmarks:

```diff ```

All benchmarks:

```diff Benchmarks that have stayed the same: | Change | Before [e1aa8872] | After [8f750b2a] | Ratio | Benchmark (Parameter) | |----------|------------------------------|---------------------|---------|----------------------------------------------------------------------------------------------------------------------------------------------| | | 17.7±5μs | 21.2±1μs | ~1.20 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list(10, 10) | | | 31.0±7μs | 28.1±6μs | ~0.91 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list(100, 10) | | | 31.8±7μs | 26.6±5μs | ~0.84 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list(100, 50) | | | 6.72±0.01ms | 3.95±0.09ms | ~0.59 | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('macroatom') | | | 511±200ns | 551±100ns | 1.08 | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation | | | 2.59±0.4ms | 2.76±0.4ms | 1.07 | transport_montecarlo_single_packet_loop.BenchmarkTransportMontecarloSinglePacketLoop.time_single_packet_loop | | | 5.73±0.9μs | 6.04±1μs | 1.05 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket | | | 6.79±2μs | 7.12±2μs | 1.05 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_volley | | | 3.14±0.4μs | 3.24±0.6μs | 1.03 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_bad_vpacket | | | 202±0.08ns | 205±0.08ns | 1.02 | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_intensity_black_body | | | 1.19±0μs | 1.21±0μs | 1.02 | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_boundary | | | 726±3ns | 739±3ns | 1.02 | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_thomson_scatter | | | 1.66±0.01ms | 1.69±0ms | 1.02 | transport_montecarlo_main_loop.BenchmarkTransportMontecarloMontecarloMainLoop.time_montecarlo_main_loop | | | 17.0±4μs | 17.2±4μs | 1.01 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list(10, 50) | | | 7.32±0μs | 7.43±0.01μs | 1.01 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(10, 10) | | | 54.5±0.09μs | 54.9±0.2μs | 1.01 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(100, 10) | | | 63.9±0.06ms | 64.5±0.6ms | 1.01 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe(100, 10) | | | 39.2±0.03s | 39.3±0.03s | 1.00 | run_tardis.BenchmarkRunTardis.time_run_tardis | | | 1.02±0m | 1.02±0m | 1.00 | run_tardis.BenchmarkRunTardis.time_run_tardis_rpacket_tracking | | | 2.07±0m | 2.07±0m | 1.00 | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_FormalIntegrator_functions | | | 45.2±30μs | 45.4±30μs | 1.00 | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_scatter | | | 63.4±0.3ms | 63.6±0.2ms | 1.00 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe(10, 10) | | | 7.86±0μs | 7.77±0.01μs | 0.99 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(10, 50) | | | 63.1±0.3ms | 62.4±0.1ms | 0.99 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe(100, 50) | | | 590±100ns | 581±100ns | 0.98 | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation | | | 2.80±0.02ms | 2.75±0.02ms | 0.98 | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('scatter') | | | 43.2±30μs | 42.2±20μs | 0.98 | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_emission | | | 2.10±1μs | 2.04±0.9μs | 0.97 | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators | | | 50.9±0.05μs | 49.3±0.06μs | 0.97 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list(100, 50) | | | 66.2±0.3ms | 64.2±0.1ms | 0.97 | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe(10, 50) | | | 3.29±0.4μs | 3.19±0.6μs | 0.97 | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_within_shell | | | 1.67±0.4μs | 1.59±0.2μs | 0.95 | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_line | | | 621±200ns | 581±200ns | 0.94 | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation | ```

If you want to see the graph of the results, you can check it here

tardis-sn / tardis