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taxprofiler / taxpasta

TAXnomic Profile Aggregation and STAndardisation
https://taxpasta.readthedocs.io/
Apache License 2.0
34 stars 7 forks source link

Add motus #40

Closed sofstam closed 1 year ago

sofstam commented 1 year ago
codecov-commenter commented 1 year ago

Codecov Report

Base: 91.20% // Head: 91.46% // Increases project coverage by +0.25% :tada:

Coverage data is based on head (0a55a3b) compared to base (6cfdd46). Patch coverage: 94.11% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #40 +/- ## ========================================== + Coverage 91.20% 91.46% +0.25% ========================================== Files 93 97 +4 Lines 1285 1335 +50 Branches 79 82 +3 ========================================== + Hits 1172 1221 +49 Misses 92 92 - Partials 21 22 +1 ``` | [Impacted Files](https://codecov.io/gh/taxprofiler/taxpasta/pull/40?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [...table\_writer/biom\_wide\_observation\_table\_writer.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3dpZGVfb2JzZXJ2YXRpb25fdGFibGVfd3JpdGVyL2Jpb21fd2lkZV9vYnNlcnZhdGlvbl90YWJsZV93cml0ZXIucHk=) | `100.00% <ø> (ø)` | | | [...ucture/application/application\_service\_registry.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2FwcGxpY2F0aW9uX3NlcnZpY2VfcmVnaXN0cnkucHk=) | `91.97% <83.33%> (+1.06%)` | :arrow_up: | | [...tructure/application/motus/motus\_profile\_reader.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL21vdHVzL21vdHVzX3Byb2ZpbGVfcmVhZGVyLnB5) | `83.33% <83.33%> (ø)` | | | [...rc/taxpasta/infrastructure/application/\_\_init\_\_.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [...pasta/infrastructure/application/motus/\_\_init\_\_.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL21vdHVzL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [.../infrastructure/application/motus/motus\_profile.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL21vdHVzL21vdHVzX3Byb2ZpbGUucHk=) | `100.00% <100.00%> (ø)` | | | [...ion/motus/motus\_profile\_standardisation\_service.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL21vdHVzL21vdHVzX3Byb2ZpbGVfc3RhbmRhcmRpc2F0aW9uX3NlcnZpY2UucHk=) | `100.00% <100.00%> (ø)` | | | [...a/infrastructure/application/supported\_profiler.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/40/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3N1cHBvcnRlZF9wcm9maWxlci5weQ==) | `100.00% <100.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None)

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