taxprofiler / taxpasta

TAXnomic Profile Aggregation and STAndardisation
https://taxpasta.readthedocs.io/
Apache License 2.0
34 stars 7 forks source link

feat: enable reading & writing Parquet files #44

Closed Midnighter closed 1 year ago

Midnighter commented 1 year ago
codecov-commenter commented 1 year ago

Codecov Report

Base: 91.20% // Head: 91.53% // Increases project coverage by +0.32% :tada:

Coverage data is based on head (f616459) compared to base (6cfdd46). Patch coverage: 94.00% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #44 +/- ## ========================================== + Coverage 91.20% 91.53% +0.32% ========================================== Files 93 97 +4 Lines 1285 1335 +50 Branches 79 83 +4 ========================================== + Hits 1172 1222 +50 Misses 92 92 Partials 21 21 ``` | [Impacted Files](https://codecov.io/gh/taxprofiler/taxpasta/pull/44?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [...ucture/application/application\_service\_registry.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2FwcGxpY2F0aW9uX3NlcnZpY2VfcmVnaXN0cnkucHk=) | `91.66% <75.00%> (+0.75%)` | :arrow_up: | | [...ucture/application/standard\_profile\_file\_format.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3N0YW5kYXJkX3Byb2ZpbGVfZmlsZV9mb3JtYXQucHk=) | `100.00% <100.00%> (ø)` | | | [...\_profile\_writer/parquet\_standard\_profile\_writer.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3N0YW5kYXJkX3Byb2ZpbGVfd3JpdGVyL3BhcnF1ZXRfc3RhbmRhcmRfcHJvZmlsZV93cml0ZXIucHk=) | `100.00% <100.00%> (ø)` | | | [...e/application/table\_reader/parquet\_table\_reader.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3RhYmxlX3JlYWRlci9wYXJxdWV0X3RhYmxlX3JlYWRlci5weQ==) | `100.00% <100.00%> (ø)` | | | [...astructure/application/table\_reader\_file\_format.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3RhYmxlX3JlYWRlcl9maWxlX2Zvcm1hdC5weQ==) | `100.00% <100.00%> (ø)` | | | [.../application/tidy\_observation\_table\_file\_format.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3RpZHlfb2JzZXJ2YXRpb25fdGFibGVfZmlsZV9mb3JtYXQucHk=) | `100.00% <100.00%> (ø)` | | | [...y\_observation\_table\_writer/parquet\_table\_writer.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3RpZHlfb2JzZXJ2YXRpb25fdGFibGVfd3JpdGVyL3BhcnF1ZXRfdGFibGVfd3JpdGVyLnB5) | `100.00% <100.00%> (ø)` | | | [.../application/wide\_observation\_table\_file\_format.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3dpZGVfb2JzZXJ2YXRpb25fdGFibGVfZmlsZV9mb3JtYXQucHk=) | `100.00% <100.00%> (ø)` | | | [...le\_writer/parquet\_wide\_observation\_table\_writer.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/44/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3dpZGVfb2JzZXJ2YXRpb25fdGFibGVfd3JpdGVyL3BhcnF1ZXRfd2lkZV9vYnNlcnZhdGlvbl90YWJsZV93cml0ZXIucHk=) | `100.00% <100.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None)

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