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telatin
/
bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
https://telatin.github.io/bamtocov/
MIT License
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[BUG] run time exceeds > 6 hours human exome
#12
ESDeutekom
opened
2 months ago
1
`bamtocov` generated "ERROR: coverage went backwards from 0 to 0"
#11
ChooseelBunsuwansakul
opened
1 year ago
0
"invalid integer: everything" when trying to run BamToCov
#10
leone93
closed
2 years ago
3
How did bamtocov deal with paired-end bam from stranded libraries?
#9
kerenzhou062
opened
2 years ago
1
A way to calculate coverage breadth
#8
BharatRaviIyengar
opened
2 years ago
2
It will be very useful to add an option "--rpm" to allow users to calculate the Reads per million mapped reads
#7
kerenzhou062
opened
2 years ago
4
add an argument for bamtocov to allow the extension of reads to fragment size from single-end sequencing data
#6
kerenzhou062
opened
2 years ago
4
Missing information of strand function
#5
denise0593
closed
2 years ago
2
Multiple BAMs and no target can count chromosomes instead
#4
telatin
closed
2 years ago
0
Multibam processing using multiple threads
#3
telatin
closed
2 years ago
0
[BUG] Multiple bams and no regions produce inconsistent behaviour
#2
telatin
closed
2 years ago
1
[BUG] Avoid allowing --report when not target is supplied
#1
telatin
closed
2 years ago
1