Open cms72 opened 2 months ago
Hi,
somehow one of the dependencies (IRanges) was not installed. I will look into why not. Easiest fix for you is to try and install it manually. That should fix it. You can find instructions here:
https://www.bioconductor.org/packages/release/bioc/html/IRanges.html
Note to self, IRanges is currently in "Suggests". Need to check where it's needed and whether to move it to "Depends"
@thackl - manually installing IRanges fixed it. Many thanks!
As IRanges
is a bioconductor package, it might be problematic to have in "Depends" for our planned cran submission.
Hi,
gggenomes used to work for me, but now I get the following error. I've tried to re-install this using this dev package, but to no avail: devtools::install_github("thackl/gggenomes@fix-156",force =TRUE)
g0 <- gggenomes::read_feats(list.files(path = "~/Documents/gggenomes/",pattern="*.gbk",full.names = TRUE)) Reading 'gbk' with
read_gbk()
:• ID -> feat_id • Parent -> parent_ids • Name -> name Error in
map2()
: ℹ In index: 1. ℹ With name: 1_gggenomes_region. Caused by error inloadNamespace()
: ! there is no package called ‘IRanges’ Runrlang::last_trace()
to see where the error occurred.I hope you can help! Thanks!