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theMILOlab / SPATA2

A Toolbox for Spatial Transcriptomics Analysis
https://themilolab.github.io/SPATA2/
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use_scattermore documentation #167

Closed simonmfr closed 2 months ago

simonmfr commented 2 months ago

The documentation of plotSurface says "..If the number of data points plotted is bigger than 10.000 it is used anyway." however in plotSurface for data.frame it says

if(n_points >= 10000 & base::isTRUE(use_scattermore)){

Which option do we want to implement?

kueckelj commented 2 months ago

only if(isTRUE(use_scattermore)). Actually, ggplot2 still works fast enough with up to 100.000. So we can increase the threshold to 100.000. If the object is created with more than 100.000 observations the object defaults to use_scattermore = TRUE. I adjust the initiate functions to give an informative message about this.