Where can I find the cell_metadata.csv file for MERFISH brain data in merfish_brain.ipynb?

theislab / ncem

Learning cell communication from spatial graphs of cells

https://ncem.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

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Closed JINJINT closed 2 years ago

JINJINT commented 2 years ago

Question

Hi,

I am trying to reproduce results for the MERFISH brain data using merfish_brain.ipynb, but i cannot find the file cell_metadata.csv anywhere in the public data source https://download.brainimagelibrary.org/cf/1c/cf1c1a431ef8d021/.

Could you tell me how you got this data? Many thanks!

AnnaChristina commented 2 years ago