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theislab
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ncem
Learning cell communication from spatial graphs of cells
https://ncem.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
103
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Development
#115
AnnaChristina
closed
2 years ago
1
Revert "[DEPENDABOT]: Bump actions/download-artifact from 2.0.10 to 3.0.0"
#114
AnnaChristina
closed
2 years ago
0
Revert "[DEPENDABOT]: Bump jinja2 from 3.0.1 to 3.1.2"
#113
AnnaChristina
closed
2 years ago
0
Tutorial for deconvoluted visium
#112
AnnaChristina
closed
2 years ago
0
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.6
#111
dependabot[bot]
closed
2 years ago
2
Linear
#110
chelseabright96
closed
2 years ago
1
[DEPENDABOT]: Bump pep8-naming from 0.11.1 to 0.13.1
#109
dependabot[bot]
closed
2 years ago
2
Error while loading custom data in NCEM
#108
archanabhardwaj
closed
2 years ago
2
How to run NCEM for own spatial data?
#107
ankitbioinfo
opened
2 years ago
3
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.5
#106
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/setup-python from 2 to 4.1.0
#105
dependabot[bot]
closed
2 years ago
2
Problems using GPU
#104
ccruizm
closed
2 years ago
2
[DEPENDABOT]: Bump pep8-naming from 0.11.1 to 0.13.0
#103
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump pre-commit from 2.12.0 to 2.20.0
#102
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/setup-python from 2 to 4
#101
dependabot[bot]
closed
2 years ago
2
Error saving the output figures in png or pdf format
#100
archanabhardwaj
closed
2 years ago
1
getting only zeros at enrichment step
#99
archanabhardwaj
closed
2 years ago
1
Differential interaction
#98
wangjiawen2013
closed
2 years ago
2
Question
#97
wangjiawen2013
closed
2 years ago
1
Speed up batch generation for `EstimatorNeighborHood`
#96
ivirshup
opened
2 years ago
0
[DEPENDABOT]: Bump pre-commit-hooks from 3.4.0 to 4.3.0
#95
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.4
#94
dependabot[bot]
closed
2 years ago
2
How to implement Input CODEX data for 'NCEM
#93
Luosanj
closed
2 years ago
9
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.3
#92
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/upload-artifact from 2.2.4 to 3.1.0
#91
dependabot[bot]
closed
2 years ago
2
Release
#90
AnnaChristina
closed
2 years ago
0
Enhance plots
#89
AnnaChristina
closed
2 years ago
1
[DEPENDABOT]: Bump jinja2 from 3.0.1 to 3.1.2
#88
dependabot[bot]
closed
2 years ago
1
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.2
#87
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/upload-artifact from 2.2.4 to 3.0.0
#86
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/download-artifact from 2.0.10 to 3.0.0
#85
dependabot[bot]
closed
2 years ago
1
[DEPENDABOT]: Bump pre-commit-hooks from 3.4.0 to 4.2.0
#84
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.1
#83
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump jinja2 from 3.0.1 to 3.1.1
#82
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump jinja2 from 3.0.1 to 3.1.0
#81
dependabot[bot]
closed
2 years ago
2
Release
#80
AnnaChristina
closed
2 years ago
0
add example cell radius to plot
#79
AnnaChristina
closed
2 years ago
0
Development
#78
AnnaChristina
closed
2 years ago
1
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3
#77
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/upload-artifact from 2.2.4 to 3
#76
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump actions/download-artifact from 2.0.10 to 3
#75
dependabot[bot]
closed
2 years ago
2
would ncem work on sequencing-based spatial transcriptomic data?
#74
LuyiTian
closed
2 years ago
4
[DEPENDABOT]: Bump jinja2 from 3.0.1 to 3.0.3
#73
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump scipy from 1.7.0 to 1.7.3
#72
dependabot[bot]
closed
2 years ago
1
[DEPENDABOT]: Bump actions/download-artifact from 2.0.10 to 2.1.0
#71
dependabot[bot]
closed
2 years ago
2
Deconv visium
#70
AnnaChristina
closed
2 years ago
0
extensions to support supervised project
#69
SabrinaRichter
opened
2 years ago
7
[DEPENDABOT]: Bump pygments from 2.8.1 to 2.11.2
#68
dependabot[bot]
closed
2 years ago
1
[DEPENDABOT]: Bump pygments from 2.8.1 to 2.11.1
#67
dependabot[bot]
closed
2 years ago
2
[DEPENDABOT]: Bump pygments from 2.8.1 to 2.11.0
#66
dependabot[bot]
closed
2 years ago
2
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