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theislab
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sfaira
data and model repository for single-cell data
https://sfaira.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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added preliminary new loaders
#691
davidsebfischer
closed
2 years ago
0
10.1038/s41467-021-24807-0
#690
davidsebfischer
opened
2 years ago
0
10.1016/j.celrep.2019.10.131
#689
davidsebfischer
opened
2 years ago
0
10.1126/science.aah4573
#688
davidsebfischer
closed
2 years ago
0
10.1016/j.phrs.2022.106286
#687
davidsebfischer
opened
2 years ago
0
10.1016/j.cell.2018.05.061
#686
davidsebfischer
closed
2 years ago
0
10.1016/j.cell.2021.11.017
#685
davidsebfischer
closed
2 years ago
0
10.1038/s41467-021-27322-4
#684
davidsebfischer
closed
2 years ago
0
10.1158/2159-8290.CD-21-0316
#683
davidsebfischer
closed
2 years ago
0
10.1038/s41588-019-0489-5
#682
davidsebfischer
closed
2 years ago
0
10.1038/s41467-020-16066-2
#681
davidsebfischer
closed
2 years ago
0
10.1038/s41590-018-0276-y
#680
davidsebfischer
closed
2 years ago
0
BugFix: Moved misplaced data loaders to right place
#679
felix0097
closed
2 years ago
0
d10_1038_s41588_022_01088_x
#678
soroorh
closed
2 years ago
0
enabled batching directly from retireval batch
#677
davidsebfischer
closed
2 years ago
0
d10_1038_s41588_022_01088_x
#676
soroorh
closed
2 years ago
0
added extra test datasets that have gene names instead of ensmbl ids
#675
davidsebfischer
closed
2 years ago
0
…removed empty carts from multi cart during checkout
#674
davidsebfischer
closed
2 years ago
0
added dict based interface in ontologylist to account for names and ids
#673
davidsebfischer
closed
2 years ago
0
added methods to imitate hierarchical ontology in list ontology to al…
#672
davidsebfischer
closed
2 years ago
0
ds.streamline_features raises ConnectionRefusedError
#671
subercui
closed
1 year ago
2
added methods to imitate hierarchical ontology in list ontology
#670
davidsebfischer
closed
2 years ago
0
removed shuffle buffer warnings
#669
davidsebfischer
closed
2 years ago
0
Cannot download metadata for 10.1038/s41591-020-1061-7
#668
alex-d13
closed
1 year ago
3
The python-Levenshtein is no longer maintained, please update the dependency
#667
subercui
closed
1 year ago
1
added multi organism Dataset in addition to DatasetIteratable
#666
davidsebfischer
closed
2 years ago
0
Replace internal functionality of AnndataStore and H5adStore by Annloader as far as possible
#664
davidsebfischer
opened
2 years ago
0
Compare DAO container with zarr-only container
#663
davidsebfischer
opened
2 years ago
0
Feature/cellxgene count interface
#662
davidsebfischer
closed
2 years ago
0
enabled differential count and processed data access from cellxgene
#661
davidsebfischer
closed
2 years ago
0
added callable interface to get batch schedule kwargs in store
#660
davidsebfischer
closed
2 years ago
0
fixed cell wise assay import
#659
davidsebfischer
closed
2 years ago
0
Add support when attributes in yaml files are only specified for subset of sample_fns
#658
felix0097
closed
2 years ago
0
fixed access to dataset ID in obs name cleaning
#657
davidsebfischer
closed
2 years ago
0
fixed bug that features were sorted in collapse function
#656
davidsebfischer
closed
2 years ago
0
Data Loader: 10.1101/2022.03.10.483747
#655
felix0097
closed
2 years ago
0
added data loader and minor fixes to loader testing and var streamlining
#654
davidsebfischer
closed
2 years ago
0
Update old dataloaders to new yaml format
#653
felix0097
closed
2 years ago
1
10.1038/s41587-021-01139-4
#652
davidsebfischer
closed
2 years ago
0
Feature/improved subsetting
#651
davidsebfischer
closed
2 years ago
1
silenced dask chunk warning:
#650
davidsebfischer
closed
2 years ago
0
removed intercalation print
#649
davidsebfischer
closed
2 years ago
0
added progress bar to raw data download
#648
davidsebfischer
closed
2 years ago
0
Error when creating the data universe (10.1164/rccm.201712-2410OC)
#647
alex-d13
closed
1 year ago
6
Bug fix: d10_1038_s41591_020_1061_7
#646
felix0097
closed
2 years ago
0
Feature: Updated Iterator repeating
#645
felix0097
closed
2 years ago
0
10.1126/science.aax6234
#644
yugeji
opened
2 years ago
0
10.1038/s41467-021-21884-z
#643
stefanpeidli
opened
2 years ago
1
Dataset subset_cells
#642
davidsebfischer
closed
2 years ago
0
Feature/cart obsm
#641
davidsebfischer
closed
2 years ago
1
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