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thibautjombart / adegenet

adegenet: a R package for the multivariate analysis of genetic markers
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Remove exportPattern() from NAMESPACE #311

Open zkamvar opened 3 years ago

zkamvar commented 3 years ago

At the moment, we are using this as a kludge to export all of the functions that don't start with a dot and it's not a good practice because it makes it difficult to know what functions are for user use and what are for internal use.

Unfortunately, simply removing this breaks a lot of things as the S4 methods suddenly disappear. This is exacerbated by the fact that this package has a hybrid documentation pattern between Rd and roxygen2, which means that we have to find the source of each function and either add and #' export to it or ... something.

zkamvar commented 3 years ago

I'm not going to get this for the next release, but perhaps for 2.1.5