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thibautjombart / adegenet

adegenet: a R package for the multivariate analysis of genetic markers
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fix short bool #345

Closed zkamvar closed 1 year ago

zkamvar commented 1 year ago

It turns out I completely forgot to remove one typedef short bool;

😩

https://github.com/thibautjombart/adegenet/blob/4cdde59c03add9781e9269c7581a49d2426b057e/src/snpbin.h#L12

* installing *source* package ‘adegenet’ ...
** package ‘adegenet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 16.0.0 (https://github.com/llvm/llvm-project.git 2133e8b9f942f91ec54e28c580fccf6d6b26c62e)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang-trunk/adegenet/src'
/usr/local/clang-trunk/bin/clang -std=gnu2x -I"/data/gannet/ripley/R/R-clang-trunk/include" -DNDEBUG   -isystem /usr/local/clang-trunk/include    -fpic  -O3 -Wall -pedantic -Wstrict-prototypes  -c GLfunctions.c -o GLfunctions.o
In file included from GLfunctions.c:17:
./snpbin.h:12:9: error: 'short bool' is invalid
typedef short bool;
        ^
./snpbin.h:12:1: warning: typedef requires a name [-Wmissing-declarations]
typedef short bool;
^~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang-trunk/etc/Makeconf:191: GLfunctions.o] Error 1
/usr/local/clang-trunk/bin/clang -std=gnu2x -I"/data/gannet/ripley/R/R-clang-trunk/include" -DNDEBUG   -isystem /usr/local/clang-trunk/include    -fpic  -O3 -Wall -pedantic -Wstrict-prototypes  -c adesub.c -o adesub.o
/usr/local/clang-trunk/bin/clang -std=gnu2x -I"/data/gannet/ripley/R/R-clang-trunk/include" -DNDEBUG   -isystem /usr/local/clang-trunk/include    -fpic  -O3 -Wall -pedantic -Wstrict-prototypes  -c init.c -o init.o
/usr/local/clang-trunk/bin/clang -std=gnu2x -I"/data/gannet/ripley/R/R-clang-trunk/include" -DNDEBUG   -isystem /usr/local/clang-trunk/include    -fpic  -O3 -Wall -pedantic -Wstrict-prototypes  -c monmonier-utils.c -o monmonier-utils.o
/usr/local/clang-trunk/bin/clang -std=gnu2x -I"/data/gannet/ripley/R/R-clang-trunk/include" -DNDEBUG   -isystem /usr/local/clang-trunk/include    -fpic  -O3 -Wall -pedantic -Wstrict-prototypes  -c sharedAll.c -o sharedAll.o
/usr/local/clang-trunk/bin/clang -std=gnu2x -I"/data/gannet/ripley/R/R-clang-trunk/include" -DNDEBUG   -isystem /usr/local/clang-trunk/include    -fpic  -O3 -Wall -pedantic -Wstrict-prototypes  -c snpbin.c -o snpbin.o
In file included from snpbin.c:29:
./snpbin.h:12:9: error: 'short bool' is invalid
typedef short bool;
        ^
./snpbin.h:12:1: warning: typedef requires a name [-Wmissing-declarations]
typedef short bool;
^~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang-trunk/etc/Makeconf:191: snpbin.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang-trunk/adegenet/src'
ERROR: compilation failed for package ‘adegenet’
* removing ‘/data/gannet/ripley/R/packages/tests-clang-trunk/adegenet.Rcheck/adegenet’