timflutre / eqtlbma

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.
http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003486
GNU General Public License v3.0
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c-plus-plus qtl

eQtlBma - eQTL by Bayesian Model Averaging

This directory contains eQtlBma, a package implementing Bayesian methods to detect expression quantitative trait loci (eQTL).

This package is free software, you can redistribute it and/or modify it under the terms of the GNU General Public License (GPL-3).

The GNU General Public License does not permit this software to be redistributed in proprietary programs.

This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

The code is hosted online, https://github.com/timflutre/eqtlbma, where you can report issues: https://github.com/timflutre/eqtlbma/issues. A useful first entry point is here: https://github.com/timflutre/eqtlbma/wiki.

Installation

The package follows the standard GNU installation procedure. Please consult the INSTALL file in this distribution for more instructions.

For the impatients: ./configure make make check sudo make install

Documentation

To generate the manual in the doc/ directory, type: make pdf or make html

See the NEWS file for recent changes to the package, and ask questions on the mailing list: https://groups.google.com/forum/#!forum/eqtlbma-users.