issues
search
timoast
/
Arabidopsis-TE-variants
Analysis of TE presence/absence data
GNU General Public License v3.0
5
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
About discordant alignment
#14
xie186
closed
7 years ago
2
RSVSim code for this project
#13
xie186
closed
7 years ago
3
Rare variant analysis for DMR methylation and TE presence/absence
#12
timoast
closed
8 years ago
0
KEE region analysis
#11
timoast
closed
8 years ago
0
Histograms showing number of TE insertions/deletions in each accession
#10
timoast
closed
8 years ago
0
DNA methylation flanking TE variants
#9
timoast
closed
8 years ago
0
Gene expression heat maps for example genes affected by TEs
#8
timoast
closed
8 years ago
0
Add code for testing SNP-TE LD
#7
timoast
opened
8 years ago
1
TE family and superfamily enrichments in TEPAV set
#6
timoast
closed
8 years ago
0
All-vs-all correlations between TEPAV and DMR mC levels
#5
timoast
closed
8 years ago
1
Relationship between TE variants and DMRs
#4
timoast
closed
8 years ago
0
Effect of rare variants on gene expression
#3
timoast
closed
8 years ago
0
Effect of common variants on gene expression
#2
timoast
closed
8 years ago
0
Frequency of TE variants in different genomic features
#1
timoast
closed
8 years ago
0