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tischi / fiji-script-convertBinProject

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KeyError: crop #2

Open HenningEMBL opened 7 years ago

HenningEMBL commented 7 years ago

Hi Tischi, I finally got past registration of MIPs and want to do 3D-stack Registration now. The conversion of the mha files into tif using the fiji-convert-bin-project produces an error: KeyError: crop

Errors: Started fiji--convert-bin-project.py at Thu Feb 16 16:13:28 CET 2017 Traceback (most recent call last): File "D:\TischiReg\fiji-convert-bin-project-master\fiji--convert-bin-project.py", line 454, in tbModel = analyze(iDataSet, tbModel, p) File "D:\TischiReg\fiji-convert-bin-project-master\fiji--convert-bin-project.py", line 159, in analyze if p['crop']: KeyError: crop

Output: ...

Files to be analyzed

# 0: E:\EMBL-TEST\Henning\TischiRegSavingTest\3D-Registration--01\16-10-20_LfngT2A3xCh-Dusp4T2A3xVen_E75_4_G2_Average_Subset_E1_ch0_t000.tif--transformed.mha 1: E:\EMBL-TEST\Henning\TischiRegSavingTest\3D-Registration--01\16-10-20_LfngT2A3xCh-Dusp4T2A3xVen_E75_4_G2_Average_Subset_E1_ch0_t001.tif--transformed.mha 2: E:\EMBL-TEST\Henning\TischiRegSavingTest\3D-Registration--01\16-10-20_LfngT2A3xCh-Dusp4T2A3xVen_E75_4_G2_Average_Subset_E1_ch0_t002.tif--transformed.mha 3: E:\EMBL-TEST\Henning\TischiRegSavingTest\3D-Registration--01\16-10-20_LfngT2A3xCh-Dusp4T2A3xVen_E75_4_G2_Average_Subset_E1_ch1_t000.tif--transformed.mha 4: E:\EMBL-TEST\Henning\TischiRegSavingTest\3D-Registration--01\16-10-20_LfngT2A3xCh-Dusp4T2A3xVen_E75_4_G2_Average_Subset_E1_ch1_t001.tif--transformed.mha 5: E:\EMBL-TEST\Henning\TischiRegSavingTest\3D-Registration--01\16-10-20_LfngT2A3xCh-Dusp4T2A3xVen_E75_4_G2_Average_Subset_E1_ch1_t002.tif--transformed.mha #

Analysis

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HenningEMBL commented 7 years ago

Ok, for now I just removed the crop option from the script, then it works

tischi commented 7 years ago

I also removed it, so you can download the latest version.