search

treangenlab / emu

MIT License
34 stars 5 forks source link

Combine-output 'species' issue #27

Closed abbyf1120 closed 1 month ago

abbyf1120 commented 1 month ago

When I try to use the "emu combine-outputs --split-tables /mypath/ species" command, my tables are both empty. However, when I use "emu combine-outputs --split-tables /mypath/ tax_id," I will only obtain tables with the tax_id. I know that replacing tax_id with species is supposed to replace the IDs with their names, but I am not sure why these tables are blank. Do you have any advice?

kdc10 commented 1 month ago

Which database did you use to generate the results? Is "species" in the header for your relative abundance results tables?

abbyf1120 commented 1 month ago

Which database did you use to generate the results? Is "species" in the header for your relative abundance results tables?

I realized the issue was with which database I choose. I am sorry about the confusion.