I've been loading an expression matrix with 475 samples and 55K genes. it's been running for 3 hours and is 30% completed, so it will probably take about 10 hours to load. This isn't too bad, but I have a matrix with 17K samples and alas.... it will take too long to load.
I think the loader can be reworked similar to the updated Tripal GFF3 loader, and to what I just submitted for the BioSample loader (PR #392). I'll work on a fix.
spficklin
commented
2 years ago
I've been loading an expression matrix with 475 samples and 55K genes. it's been running for 3 hours and is 30% completed, so it will probably take about 10 hours to load. This isn't too bad, but I have a matrix with 17K samples and alas.... it will take too long to load.
I think the loader can be reworked similar to the updated Tripal GFF3 loader, and to what I just submitted for the BioSample loader (PR #392). I'll work on a fix.